Demographic inferences from NGS data
Tuesday
-
8:30-10:00: Lecture:
NGS data, uncertainties and how to deal with them(Matteo) -
10:30-12:00: Practical:
ANGSD and ngsTools(Matteo) -
13:00-14:00: Practical:
ANGSD and ngsTools(Matteo, continued)
Thursday
- 13:00-14:45: Lecture:
Inferring selection with ABC and other tools(Matteo)
- Introduction to NGS data
- Principles of SNP and genotype calling
- Summary statistics from low-depth data
- Experimental design
Slides for the lecture on NGS data can be found here.
Slides for the lecture on selection will appear at some point.
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NGS data analysis: ** Exercise 1 ** Exercise 2 ** Exercise 3 ** Exercise 4
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Selection: ** TBA