Magdoll
Personal repository. Many of the repos here are developer tools for processing PacBio Iso-Seq data. They are not officially supported. Use at your own risk.
@PacificBiosciences California
Pinned Repositories
SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
AAV
Scripts for analyzing PacBio AAV sequences
cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
Cogent
Coding Genome Reconstruction using Iso-Seq data
CoSA
Coronavirus (SARS-Cov-2) sequencing analysis
ECE
Finding Extremely Conserved Elements (ECE) from multiple species alignments
images_public
MagPhase
Phasing for metagenomics using PacBio long reads
SQANTI2
SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
IsoSeq
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
Magdoll's Repositories
Magdoll/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
Magdoll/Cogent
Coding Genome Reconstruction using Iso-Seq data
Magdoll/SQANTI2
SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
Magdoll/MagPhase
Phasing for metagenomics using PacBio long reads
Magdoll/AAV
Scripts for analyzing PacBio AAV sequences
Magdoll/CoSA
Coronavirus (SARS-Cov-2) sequencing analysis
Magdoll/ECE
Finding Extremely Conserved Elements (ECE) from multiple species alignments
Magdoll/images_public