Mahmoudbassuoni
Senior Bioinformatician at MARC
MARC for Medical Services and Scientific ResearchEgypt
Pinned Repositories
hello
DNN-based small variant caller
giab_data_indexes
This repository contains data indexes from NIST's Genome in a Bottle project.
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
bioinformatics_workshop_nu
A bioinformatics tutorial on alignment and variant calling and how to extract the Operational Taxonimc Units (OTU) out of Bacterial Fastq files.
EGYREF-Metabolic
A workflow descriptive steps for the comparison of AFs and Genotypes among the Egyptian population genome database and the 1000 genome different subpopulations.
MARC-Bioinformatics-Report-Template
A latex template format designed mainly for the reproducibility of the MARC's Bioinformatics Reports. however it can be changed to fit any other lab or research center.
Psi-caller
a lightweight short read-based variant caller with high speed and accuracy
snvphyl-galaxy-cli
A command line interface for the SNVPhyl Galaxy pipeline.
WGS_Workshop
This repository is dedicated to hosting the MARC-organized Whole Genome Sequencing workshop.
Psi-caller
a lightweight short read-based variant caller with high speed and accuracy
Mahmoudbassuoni's Repositories
Mahmoudbassuoni/MARC-Bioinformatics-Report-Template
A latex template format designed mainly for the reproducibility of the MARC's Bioinformatics Reports. however it can be changed to fit any other lab or research center.
Mahmoudbassuoni/bioinformatics_workshop_nu
A bioinformatics tutorial on alignment and variant calling and how to extract the Operational Taxonimc Units (OTU) out of Bacterial Fastq files.
Mahmoudbassuoni/EGYREF-Metabolic
A workflow descriptive steps for the comparison of AFs and Genotypes among the Egyptian population genome database and the 1000 genome different subpopulations.
Mahmoudbassuoni/Psi-caller
a lightweight short read-based variant caller with high speed and accuracy
Mahmoudbassuoni/snvphyl-galaxy-cli
A command line interface for the SNVPhyl Galaxy pipeline.
Mahmoudbassuoni/WGS_Workshop
This repository is dedicated to hosting the MARC-organized Whole Genome Sequencing workshop.