Malfoy

CNRS researcher Université_Lille/CRIStaL/Bonsai.

Bonzai / CRIStALLille

Pinned Repositories

bcalm
compacted de Bruijn graph construction in low memory
Language:Python99 11 7220
BCALM
de Bruijn CompAction in Low Memory
Language:C++23 7 47
BCOOL
de Bruijn graph cOrrectiOn from graph aLignment
Language:Python11 3 44
BGREAT
de Bruijn Graph REAd mapping Tool
Language:C++14 5 52
BGREAT2
Paired reads mapping on de Bruijn graph
Language:C++13 3 31
Blight
De Bruijn graph representation in low memory
Language:C++36 7 46
Brisk
Brisk Reduced Index for Sequence of K-mers
Language:C++3 4 11
BWISE
de Bruijn Workflow using Integral information of Short pair End reads
Language:C++13 9 182
NIQKI
Next Index to Query Kmer Intersection
Language:C++16 6 31
BBHash
Bloom-filter based minimal perfect hash function library
Language:C++244 19 1127

Malfoy's Repositories

Malfoy/Blight
De Bruijn graph representation in low memory
Language:C++36 7 46
Malfoy/NIQKI
Next Index to Query Kmer Intersection
Language:C++16 6 31
Malfoy/BGREAT
de Bruijn Graph REAd mapping Tool
Language:C++14 5 52
Malfoy/BGREAT2
Paired reads mapping on de Bruijn graph
Language:C++13 3 31
Malfoy/BWISE
de Bruijn Workflow using Integral information of Short pair End reads
Language:C++13 9 182
Malfoy/BCOOL
de Bruijn graph cOrrectiOn from graph aLignment
Language:Python11 3 44
Malfoy/Miekki
Minhash Index Extended to Knead Kmer Intersection
Language:C++11 5 11
Malfoy/PAC
Language:C++10 4 43
Malfoy/BRAW
Box of not RelAted Work
Language:C++4 3 04
Malfoy/Brisk
Brisk Reduced Index for Sequence of K-mers
Language:C++3 4 11
Malfoy/Onika
Optimal Naive Inverted index for Kmer Analysis
Language:C++3 3 0
Malfoy/Bcash
Best compressible hash
Language:C++2 4 0
Malfoy/HashesIndexes
Internship
Language:C++2 4 0
Malfoy/KFC
kmer week experiment
Language:C++2 9 01
Malfoy/BGREAT3
Language:C++1 3 0
Malfoy/BOA
Bug-free pOA. Jokes appart: POA V2 code with minor (but important) fixes
Language:C1 4 01
Malfoy/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell3 0
Malfoy/BLIAL
de Bruijn graph with Length varIAbLe
Language:C++3 0
Malfoy/BMEAN
Bold Multiple sEquence mAppiNg
Language:C++4 0
Malfoy/BONE
BackBONE detector from erroneous sequences
Language:C++3 0
Malfoy/BREADY
Break READs redundancY
Language:CMake3 0
Malfoy/BTRIM
de Bruijn graph TRIMming tool
Language:C++3 1
Malfoy/BTT
Bruijn graph Triming for Transcriptomic
Language:C++3 0
Malfoy/ColorMeAmazed
Language:C++3 0
Malfoy/Freddie
Polyploid assembly Kmer analysis
Language:C++3 0
Malfoy/HL3
Language:C3 0
Malfoy/malfoy.github.io
4 02
Malfoy/PlayAssembly
Test assembly
Language:C++3 03
Malfoy/pufferfish
An efficient index for the colored, compacted, de Bruijn graph
Language:C++2 0
Malfoy/TP_Assembly
Assembly Tp
4 0