Confused with the programme
Opened this issue · 1 comments
YiwenZhou commented
I finished running BGREAT and end up with a path file
How can i use GGmap to utilise path file which is from BGREAT? Do you example of using GGmap?
YiwenZhou commented
GGMAP.py -r W_Forward_Paired.fa,W_Reverse_Paired.fa -g ~/Research_S.pneumoniae/Raw_Reads/Preprocessed/W_Prepro/kmer_31/list_reads_31.unitigs.fa test -t 4
Traceback (most recent call last):
File "/home/ubuntu/Downloads/BGREAT/GGMAP.py", line 19, in
subprocess.call(['/usr/bin/time','-f',"'%e %P %M'",'./bgreat','-r',readFile,'-g',unitigFile,'-k',k,'-t',nthread])
NameError: name 'k' is not defined
can you plz solve it?