/ScaledPoisson

Primary LanguageJupyter NotebookGNU General Public License v3.0GPL-3.0

ScaledPoisson

This repo has code and data related to our work on scaled Poisson mixture model applied to cluster single-cell ATAC-seq data taking into account sequencing depth variation of individial cells.

Synthetic data:

The uploaded archive for synthetic data is a csv file, unzip it before running. In the CSV file, cells are in the rows and peaks are in the columns.

Also provided the original clustering labels for this data as well as tSNE co-ordinates.