Manigben
Plant breeding, Genetics and Genomics
CSIR - Savanna Agricultural Research Institute (SARI)Nyankpala, Tamale, Ghana
Pinned Repositories
admixture_pie_chart_map_tutorial
Tutorial for visualising admixture on a map
agriutilities
Analysis-pipeline
ARIA2.0
Automated Root Imaging Analysis 2.0
ASReml-R-Short-Course
Course notes and scripts from ASReml-R short course taught by Salvador Gezan at the USDA-ARS station in Miami, FL
barcodelabel
A shiny app to generate labels with barcpdes
Bison-Fly
Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are presenting step by step how we have been applying UAV data on our breeding program. This is a open source R code from where anyone can use and adept for different crops. All suggestions are welcome. Help us to build this platform in partnership with Drone2Phenome community.
Bison-Fly_Workshop_01
Workshop presented at the 2022 NAPPN Annual Conference in Athens, Georgia. In this course, I present step-by-step how we leverage UAV data in our breeding program. This is open source R code that anyone may use and adopt for different crops and situations. The Bison-Fly tutorial is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome (D2P). We hope this pipeline helps you with your research, and all suggestions to improve it are welcome.
DryBean_MultiEnvTrials
GP_EC_Biomass_Sorghum
Manigben's Repositories
Manigben/DryBean_MultiEnvTrials
Manigben/GP_EC_Biomass_Sorghum
Manigben/agriutilities
Manigben/Analysis-pipeline
Manigben/BarnSwallow
Manigben/Bison-Fly
Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are presenting step by step how we have been applying UAV data on our breeding program. This is a open source R code from where anyone can use and adept for different crops. All suggestions are welcome. Help us to build this platform in partnership with Drone2Phenome community.
Manigben/Bison-Fly_Workshop_01
Workshop presented at the 2022 NAPPN Annual Conference in Athens, Georgia. In this course, I present step-by-step how we leverage UAV data in our breeding program. This is open source R code that anyone may use and adopt for different crops and situations. The Bison-Fly tutorial is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome (D2P). We hope this pipeline helps you with your research, and all suggestions to improve it are welcome.
Manigben/BnaGWAS
GWAS platform for core collection of Brassica napus
Manigben/COP-CIAT
Manigben/cqProt-003
Manigben/emmax-pipeline
GWAS analysis process based on EMMAX software
Manigben/FIELDimageR-Workshop-10
Workshop presented for NAPB. In this course, I went through the basic steps of the FIELDimageR pipeline showing how to evaluate and apply remote sensing data in plant breeding.
Manigben/GAPIT3
Genome Association Predict Integrate Tools
Manigben/GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
Manigben/GerminaR
Packages for graphics and index for seed germination ecophysiological evaluation
Manigben/GIS-PLS
Manigben/GP_Sorghumhybrids
Mixed model analysis of heterosis in a line x tester data, heritability estimation, variance component analysis and Genomic Prediction of hybrid performance and general combining abilities
Manigben/inti
Tools and Statistical Procedures in Plant Science
Manigben/LocusZooms
Make LocusZoom-like plots with your own LD matrix.
Manigben/MendelPeaG2P
All codes associated with MendelPeaG2P project
Manigben/meteostat-python
Access and analyze historical weather and climate data with Python.
Manigben/Mini_Curso_GxE_pt
Repositório dedicado ao curso GxE ministrado para o grupo EuGeM da Universidade Federal de Goiás (UFG) em 26 de junho de 2021
Manigben/Oat_Multi-omics_Prediction
R scripts for Oat_Multi-omics_Prediction
Manigben/publication_perfect
Six hour hands-on to creating publication-quality plots in R
Manigben/SAT
Package for sharing association test and analysis
Manigben/SomeScript
There are some useful scripts.
Manigben/Sorghum_SNP_dataset
Manigben/statgenGxE
See https://biometris.github.io/statgenGxE/index.html for a full description
Manigben/Sunflower-GWAS-v2
SAM panel GWAS pipeline
Manigben/vit_predict
Optimal training population design and consensus sequence calculation, used for genomic prediction of vitamin content in maize