MaraTat

amazon-sagemaker-clarify

Fairness Aware Machine Learning. Bias detection and mitigation for datasets and models.

amino_acid_encoding_deep_learning_applications

The repository contains all the code for the paper amino acid encoding using deep learning application

APIs_Genbank_db

catalog_of_requirements_for_ai_products

The purpose of the catalog is to help data science teams to collect all the requirements to consider while building a ML model and productionizing it.

Create_Populate_Database_mySQL

Creates a database with column information from a Genbank file and loads the data output from the functions in the repository No_Biopython_No_Problem (can be imported as a module).

docs

Documentation of the Snakemake-Workflows project

epitopepredict

Python package and command line tool for epitope prediction

ethereumbook

Mastering Ethereum, by Andreas M. Antonopoulos, Gavin Wood

my_msc_project

proline_conformation_prediction

sanbomics_scripts

scripts and notebooks from sanbomics

MaraTat/sanbomics_scripts

scripts and notebooks from sanbomics

MaraTat/amazon-sagemaker-clarify

Fairness Aware Machine Learning. Bias detection and mitigation for datasets and models.

MaraTat/amino_acid_encoding_deep_learning_applications

The repository contains all the code for the paper amino acid encoding using deep learning application

MaraTat/APIs_Genbank_db

MaraTat/catalog_of_requirements_for_ai_products

The purpose of the catalog is to help data science teams to collect all the requirements to consider while building a ML model and productionizing it.

MaraTat/Create_Populate_Database_mySQL

Creates a database with column information from a Genbank file and loads the data output from the functions in the repository No_Biopython_No_Problem (can be imported as a module).

MaraTat/docs

Documentation of the Snakemake-Workflows project

MaraTat/epitopepredict

Python package and command line tool for epitope prediction

MaraTat/ethereumbook

Mastering Ethereum, by Andreas M. Antonopoulos, Gavin Wood

MaraTat/my_msc_project

proline_conformation_prediction

MaraTat/No_Biopython_No_Problem

Extracting the data from the GenBank file with multiple gene entries without the use of Biopython

MaraTat/padua

Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)

MaraTat/Perturbseq_GI

Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"

MaraTat/pride-inspector

PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics

MaraTat/PythonProteomics

A collection of available Python tools for Proteomics analysis

MaraTat/scikit-learn-videos

Jupyter notebooks from the scikit-learn video series

MaraTat/shap

A game theoretic approach to explain the output of any machine learning model.

MaraTat/teaching

Material for courses I have taught/been involved in