Marien-kaefer
Image Analyst in the Centre for Cell Imaging at the University of Liverpool
University of LiverpoolLiverpool, UK
Pinned Repositories
BiofilmAnalysisFiji
CD7-downstream-analysis-and-tools
Downstream data analysis and visualisation tools
Count-objects-within-objects
Count objects within objects programmatically
Fiji-snippets
Bits and pieces in Fiji macro language
Flies-climbing-inside-tube
General_Fiji_macros
general macros for standard tasks
Incucyte_image-handling_and_processing
Incucyte image handling and processing for third party software analysis
Marien-kaefer.github.io
ObjectCountingAndMeasurements
Counting and more
ROI-intensities
extract channel, generate ROIs from segmentation and measure channel intensities
Marien-kaefer's Repositories
Marien-kaefer/ObjectCountingAndMeasurements
Counting and more
Marien-kaefer/ROI-intensities
extract channel, generate ROIs from segmentation and measure channel intensities
Marien-kaefer/BiofilmAnalysisFiji
Marien-kaefer/CD7-downstream-analysis-and-tools
Downstream data analysis and visualisation tools
Marien-kaefer/Count-objects-within-objects
Count objects within objects programmatically
Marien-kaefer/Fiji-snippets
Bits and pieces in Fiji macro language
Marien-kaefer/Flies-climbing-inside-tube
Marien-kaefer/General_Fiji_macros
general macros for standard tasks
Marien-kaefer/Incucyte_image-handling_and_processing
Incucyte image handling and processing for third party software analysis
Marien-kaefer/Marien-kaefer.github.io
Marien-kaefer/imjoy-starter
Marien-kaefer/Insect-counting-in-zones
Counting insects in different zones within larger compartments
Marien-kaefer/intensity-of-individual-FISH-labelled-bacteria
identify individual bacteria and measure the mean intensity
Marien-kaefer/MSD-analyser
Implementation of matlab class MSD analyzer by Jean-Yves Tinevez
Marien-kaefer/python-snippets
short python scripts
Marien-kaefer/ramification_index
Calculate ramification index of objects in segmentation mask
Marien-kaefer/TrackMate-Track-Length-and-Straightness
Calculates the total Track Length, Track Displacement and Track Straightnees from TrackMate "Spots in Tracks statistics.txt" results
Marien-kaefer/wound-healing
wound healing assay