/MonoWEB

MonoWEB is a intuitive web interface for cardiac electrophisiology simulation.

Primary LanguageC

The MonoWEB is an integration between the cardiac electrophysiology simulator MonoAlg3D and a intuitive WEB interface.

Pre-Requisites

Linux or WSL:

  • Nvidia Driver
  • CUDA library
  • Paraview 5.12+
  • Python 3.10+

Setting the enviroment:

  • Configure a virtual environment with python-virtualenv:
$ python3 -m pip install --user virtualenv 
$ python3 -m pip virtualenv venv

For python3.11+, its necessary to use the sudo privileges to install virtualenv.

  • Install the Trame dependencies
$ source ./venv/bin/activate
$ export PV_VENV=~/venv
$ pip install trame trame-vuetify trame-vtk trame-plotly plotly
  • Clone this repository inside the /venv/ directory
  • Build MonoAlg3D (inside the MonoAlg3D_C directory):
$ ./build.sh simulator
  • Run (inside the MonoAlg3D_C directory)
$ pvpython --force-offscreen-rendering app.py --virtual-env ../../

  • To run the examples for MonoWEB, you can run the python file "run_examples.py" inside the MonoAlg_3D directory with the flags:

    --all Run every available example --1 Run EX01 - healthy tissue --2 Run EX02 - healthy tissue arrhythmia --3 Run EX03 - ischemic arrhythmia --4 Run EX04 - 3D healthy tissue --5 Run EX05 - fibrillation --6 Run EX06 - S1-S2 fibrosis --7 Run EX07 - S1-S2 ischemia --8 Run EX08 - S1-S2 isthmus --9 Run EX09 - fibrosis+ischemia+long qt syndrome --10 Run EX10 - long qt syndrome

$ python3 run_examples.py --all