Mark-S-Hill
Principal Research Fellow - Senior Bioinformatician working on cancer evolutionary genomics. Pop Gen, statistics, software dev, coding.
Francis Crick Institute London
Pinned Repositories
cancereffectsizeR
cancereffectsizeR: an R package to measure the cancer effect size of somatic mutations
cellcoal
CellCoal: coalescent simulation of single-cell NGS genotypes
chisel
CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
hatchet
HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
rust-utils
A collection of command line utilities built in rust.
rustlings
:crab: Small exercises to get you used to reading and writing Rust code!
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
TensorFlow-Examples
TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Mark-S-Hill's Repositories
Mark-S-Hill/cancereffectsizeR
cancereffectsizeR: an R package to measure the cancer effect size of somatic mutations
Mark-S-Hill/cellcoal
CellCoal: coalescent simulation of single-cell NGS genotypes
Mark-S-Hill/chisel
CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
Mark-S-Hill/hatchet
HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.
Mark-S-Hill/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Mark-S-Hill/rust-utils
A collection of command line utilities built in rust.
Mark-S-Hill/rustlings
:crab: Small exercises to get you used to reading and writing Rust code!
Mark-S-Hill/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Mark-S-Hill/TensorFlow-Examples
TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)