Pinned Repositories
2020plus
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
bnem
Boolean Nested Effect Models - https://doi.org/10.1093/bioinformatics/btv680 - https://bioconductor.org/packages/bnem
DawnRank
driver gene identification algorithm DawnRank 2014
dce
Finding the causality in biological pathways
electron-quick-start
Clone to try a simple Electron app
epiNEM
Epistatic Nested Effects Models - https://doi.org/10.1371/journal.pcbi.1005496 - https://bioconductor.org/packages/epiNEM/
mnem
Mixture Nested Effects Models - https://doi.org/10.1093/bioinformatics/bty602 - https://bioconductor.org/packages/mnem
mnemia
mnempy
Python implementation of the R/Bioconductor package mnem
nempi
Nested Effects Models based Perturbation Inference - https://doi.org/10.1093/bioinformatics/btab113 - https://bioconductor.org/packages/nempi
MartinFXP's Repositories
MartinFXP/DawnRank
driver gene identification algorithm DawnRank 2014
MartinFXP/bnem
Boolean Nested Effect Models - https://doi.org/10.1093/bioinformatics/btv680 - https://bioconductor.org/packages/bnem
MartinFXP/2020plus
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
MartinFXP/dce
Finding the causality in biological pathways
MartinFXP/electron-quick-start
Clone to try a simple Electron app
MartinFXP/epiNEM
Epistatic Nested Effects Models - https://doi.org/10.1371/journal.pcbi.1005496 - https://bioconductor.org/packages/epiNEM/
MartinFXP/g2p-recco_analysis
MartinFXP/MAP_118
Mutational anitgenic profiling of 1-18
MartinFXP/mnem
Mixture Nested Effects Models - https://doi.org/10.1093/bioinformatics/bty602 - https://bioconductor.org/packages/mnem
MartinFXP/mnemia
MartinFXP/mnempy
Python implementation of the R/Bioconductor package mnem
MartinFXP/nempi
Nested Effects Models based Perturbation Inference - https://doi.org/10.1093/bioinformatics/btab113 - https://bioconductor.org/packages/nempi
MartinFXP/MartinFXP.github.io
MartinFXP/MC-CBN
MC-CBN performs large-scale inference on conjunctive Bayesian networks
MartinFXP/mlr3book
mlr3 manual
MartinFXP/mnempp
C++ implementation of the R/Bioconductor package mnem
MartinFXP/RcppFun
Helper function implemented with Rcpp.
MartinFXP/rnaiutilities
A collection of python tools for processing image-based RNAi screens.
MartinFXP/Serum_analysis
MartinFXP/shinyproxy-docker-compose-example
An example to set up a docker compose for ShinyProxy
MartinFXP/slidr
An R package for identification of synthetic lethal partners for mutations from large perturbation screens.
MartinFXP/snappy
SNAPPy is a Snakemake pipeline for HIV-1 subtyping by phylogenetic pairing.
MartinFXP/split-seq-pipeline
MartinFXP/sync-async-callr
A simple Shiny app to demonstrate asynchronous background execution in Shiny