Pinned Repositories
scONE-seq-data-processing
scONE-seq analysis codes
CaSpER
SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
infercnv
Inferring CNV from Single-Cell RNA-Seq
FLCNA
Simultaneous CNV Detection And Subclone Clustering With Single Cell DNA Sequencing Data
numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
Mashuaiii.github.io
Ma's blog
copykat
XClone
Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
multiOmicsViz
Mashuaiii's Repositories
Mashuaiii/Mashuaiii.github.io
Ma's blog