Pinned Repositories
3d-analysis-toolkit
Bunch of tools for 3d analysis.
cluster-paired-end-tags
Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments
ConsensuSV
A tool for getting consensus of SVs.
ConsensuSV-core
A tool for getting consensus of SVs.
ConsensuSV-core
A tool for getting consensus of SVs.
ConsensuSV-nf-pipeline
ConsensuSV nextflow pipeline
ConsensuSV-pipeline
Automatised pipeline of ConsensuSV workflow.
HiCDiffusion
nf-hichip
Pipeline for processing HiChIP data.
spex
MateuszChilinski's Repositories
MateuszChilinski/3d-analysis-toolkit
Bunch of tools for 3d analysis.
MateuszChilinski/cluster-paired-end-tags
Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments
MateuszChilinski/ConsensuSV
A tool for getting consensus of SVs.
MateuszChilinski/ConsensuSV-core
A tool for getting consensus of SVs.
MateuszChilinski/ConsensuSV-ONT-pipeline
MateuszChilinski/ConsensuSV-pipeline
Automatised pipeline of ConsensuSV workflow.
MateuszChilinski/DHL
Deep Hybrid Learning
MateuszChilinski/HiCapTools
A software suite for Probe Design and Proximity Detection for targeted chromosome conformation capture applications
MateuszChilinski/HiCDiffusion
MateuszChilinski/nf-hichip
Pipeline for processing HiChIP data.
MateuszChilinski/ParallelThreadsProfilingTool
CUDA profiling tool, allowing the user to add markers inside kernels which report to csv when reached.
MateuszChilinski/puffin
deep learning-inspired explainable sequence model for transcription initiation
MateuszChilinski/spex