MathCancer/PhysiCell

Issues

• Enhancement: MCDS output.xml label carries additional information about the column data type

  #270 opened a month ago by elmbeech
  1

• PhysiCell::Cell_Definition possibly memory leaking

  #263 opened a month ago by elmbeech
  2

• PhysiCell_settings-backup.xml concept is broken

  #259 opened a month ago by elmbeech
  1

• Improvement: max_time or max_cell to stop execution

  #177 opened a month ago by elmbeech
  0

• Improvement: flexible output

  #175 opened a month ago by elmbeech
  0

• Error handling

  #166 opened a month ago by elmbeech
  0

• spaces for tab

  #255 opened a month ago by elmbeech
  0

• Improvement: lineage tree information in default output

  #221 opened a month ago by elmbeech
  1

• rare nullptr in get_single_signal

  #320 opened 2 months ago by rheiland
  7

• phagocytosis should be better conserving

  #306 opened 2 months ago by MathCancer
  1

• conserve internalized substrates on transform

  #293 opened 2 months ago by drbergman
  3

• save random seed from <random_seed>system_clock</random_seed>

  #321 opened 2 months ago by rheiland
  2

• Physicell studio run simulation error

  #313 opened 3 months ago by sessler
  2

• Error setting up physicell studio: error message 'QSpinBox' object has no attribute 'textChanged'

  #312 opened 3 months ago by sessler
  7

• find coordinates of a cell

  #151 opened 3 months ago by sessler
  4

• Running simulation on HPCC

  #150 opened 3 months ago by tony1747
  11

• Improvement: output.xml files with cell_type and substrate names

  #176 opened 4 months ago by elmbeech
  1

• cells.csv and cell_rules.csv in output folder

  #256 opened 4 months ago by elmbeech
  1

• sample_projects_intracellular ode and fba Makefile are incomplete

  #257 opened 4 months ago by elmbeech
  1

• sample_projects_intracellular/fba/cancer_metabolism has two Makefiles one for windows one for unix

  #258 opened 4 months ago by elmbeech
  1

• volume NOT conserved on cell transformation; also duplicate Volume class

  #283 opened 5 months ago by drbergman
  1

• cells ICs .csv files - line endings (CRLF vs LF)

  #272 opened 5 months ago by rheiland
  0

• Clarifying attack/damage rates

  #223 opened 5 months ago by drbergman
  2

• custom cell division; cell lineage

  #269 opened 6 months ago by rheiland
  6

• disconnect between Studio and C++ for custom cell functions, etc.

  #265 opened 6 months ago by rheiland
  1

• Improvement: Makefile save command automatically adjusts PROJ := my_project

  #222 opened 7 months ago by elmbeech
  1

• saving rules v1 instead of v2 to /output

  #225 opened 9 months ago by rheiland
  3

• Improvement: code generates output folder

  #183 opened 7 months ago by elmbeech
  4

• Fails to build with NVHPC 24.5

  #236 opened 8 months ago by fspiga
  2

• Cell definitions share fixed_duration boolean for apoptosis death model

  #199 opened a year ago by drbergman
  5

• cell_rules.csv has typos

  #170 opened 7 months ago by rheiland
  0

• Sporadic error when rules sharing cell type and behavior

  #206 opened 7 months ago by drbergman
  14

• hard-coded buffer size can crash saving output for large models

  #234 opened 8 months ago by rheiland
  0

• MultiCellDS saves `elapsed_time_in_phase` twice?

  #229 opened 9 months ago by drbergman
  0

• Command "make" errors out on windows

  #228 opened 9 months ago by jreid2454
  5

• make reset - avoid "rm *.cpp"?

  #212 opened a year ago by rheiland
  6

• Passing in files and folders as command line arguments

  #220 opened 10 months ago by drbergman
  0

• DC function standardization

  #214 opened a year ago by drbergman
  1

• suspicious that custom data conserved attribute not being set

  #208 opened a year ago by rheiland
  2

• hierarchical XML config files

  #173 opened a year ago by rheiland
  0

• rename cancer_biorobots executable

  #168 opened a year ago by rheiland
  0

• PhyisiCell_rules typo in some Makefiles

  #171 opened a year ago by rheiland
  1

• interactions sample project missing number_of_cells user param

  #152 opened a year ago by rheiland
  1

• Compiling PhysiCell in a MacBook Pro with M2

  #169 opened 2 years ago by mixcoha
  1

• duplicate/confusing assignment for maximum_attachment_rate

  #146 opened 2 years ago by rheiland
  1

• output0*_graph.txt filename

  #136 opened 2 years ago by elmbeech
  2

• standalone <molecular/> tag in PhysiCell_settings.xml

  #137 opened 2 years ago by elmbeech
  1

• [BUG] Calcified fraction (possibly) not calculated correctly in `standard_volume_update_function`

  #133 opened 2 years ago by JulianoGianlupi
  5

• bogus BioFVM_vector.o in 1.10.4 release

  #132 opened 2 years ago by rheiland
  1

• DS_Store

  #135 opened 2 years ago by elmbeech
  1