MathieuBo
Senior Research Fellow interested in neurodegeneration
@duff-lab-team, UKDRI at UCL London, UK
Pinned Repositories
AgentSpreading
Implementation of SIR agent-based model for pathogenic protein spreading
AP_histology
Histology processing
bg-atlasgen
bg-heatmaps
Rendering heatmaps in brainrender
cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
coppafish
Python version of iss software
coppafish_tools
mTorc2_mito_fission
Jupyter notebooks to process proteomic data
PlotRecipe
Estimate plots + stats recipe
MathieuBo's Repositories
MathieuBo/mTorc2_mito_fission
Jupyter notebooks to process proteomic data
MathieuBo/PlotRecipe
Estimate plots + stats recipe
MathieuBo/AgentSpreading
Implementation of SIR agent-based model for pathogenic protein spreading
MathieuBo/AP_histology
Histology processing
MathieuBo/bg-atlasgen
MathieuBo/bg-heatmaps
Rendering heatmaps in brainrender
MathieuBo/cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
MathieuBo/coppafish
Python version of iss software
MathieuBo/coppafish_tools
MathieuBo/Dendra_DIAna
Collection of Macro to quantify KFERQ-Dendra puncta in 3D using DIAna plugin
MathieuBo/DLC_analysis
Useful scripts for the analysis of DeepLabCut tracks
MathieuBo/shared_iss_scripts
Dream team ISS
MathieuBo/GSEApy
Gene Set Enrichment Analysis in Python
MathieuBo/iss
Code for analysis of in situ sequencing
MathieuBo/iss_viewer
MathieuBo/iss_viewer2
MathieuBo/KFERQ_helper
Helpful notebook for analysis of KFERQ-like motifs abundance
MathieuBo/mathieubo.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
MathieuBo/MSP_pipeline
Multimodal Spatiotemporal Phenotyping pipeline
MathieuBo/multi_padlock_design
Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling
MathieuBo/PathoSpreading
MathieuBo/pciSeq
A probabilistic cell typing algorithm for spatial transcriptomics.
MathieuBo/Perceptromic
MathieuBo/perceptromic_server
MathieuBo/Re-Henderson-2019
Replication of Henderson 2019
MathieuBo/ReFonkeu2019
Replication of Fonkeu et al. 2019 Neuron (DOI:10.1016/j.neuron.2019.06.022)
MathieuBo/RidgeMapPyrenees
MathieuBo/SIR_mouse
Agent-based SIR Model for the mouse brain
MathieuBo/snRNAseq-analysis