Pinned Repositories
AdditionalBAMStatistics
Source code for AdditionalBAMStatistics
AdditionalBAMStatisticsSingularity
Singularity definition file for AdditionalBAMStatistics
AML-RoaMeR
Calculate RMR values for somatic mutations in AML
AnnotateBRASS
Package for further annotation of BRASS output for filtering purposes.
annotateSniffles
Annotate Sniffles files using controls for filtering
ExtractSVChains
Extract fold-back inversion and fold-back inversion with small templated insertion chains from BRASS output
overlapSnifflesPindel
Detect Sniffles annotated small deletions in Illumina WGS data.
SangerLCMFiltering
validateStructuralVariants
Redetect structural variants determined from Illumina WGS data by BRASS in matched PacBio WGS data
validateSVIllumina
Determine whether SV is present in Illumina WGS data
MathijsSanders's Repositories
MathijsSanders/SangerLCMFiltering
MathijsSanders/AnnotateBRASS
Package for further annotation of BRASS output for filtering purposes.
MathijsSanders/validateStructuralVariants
Redetect structural variants determined from Illumina WGS data by BRASS in matched PacBio WGS data
MathijsSanders/validateSVIllumina
Determine whether SV is present in Illumina WGS data
MathijsSanders/annotateSniffles
Annotate Sniffles files using controls for filtering
MathijsSanders/ExtractSVChains
Extract fold-back inversion and fold-back inversion with small templated insertion chains from BRASS output
MathijsSanders/overlapSnifflesPindel
Detect Sniffles annotated small deletions in Illumina WGS data.
MathijsSanders/AdditionalBAMStatistics
Source code for AdditionalBAMStatistics
MathijsSanders/AdditionalBAMStatisticsSingularity
Singularity definition file for AdditionalBAMStatistics
MathijsSanders/AML-RoaMeR
Calculate RMR values for somatic mutations in AML
MathijsSanders/AnnotateBAMStatistics
Source code for AnnotateBAMStatistics
MathijsSanders/AnnotateBAMStatisticsSingularity
MathijsSanders/ComplexHeatmap
Make Complex Heatmaps
MathijsSanders/ConstructASCATFiles
MathijsSanders/mathijssanders.github.io
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MathijsSanders/MMR
Scripts for the MMR manuscript
MathijsSanders/PREASCAT
MathijsSanders/SangerFilterScripts
Scripts for filtering variants specific for the Sanger system
MathijsSanders/SangerLCMFilteringSingularity