Pinned Repositories
2020-02-17-otago
advent_of_code
Advent of Code Solutions - cloned to 2021 but I have done others
bakeR
Bread Recipes
barkley_plots
quick viz to track progress of the annual Barkley 100+ mile race
bioinformatics-spring-school-2020
ckanext-dashboard
Organize views in a single dashboard
COVID19
COVID19 Dashboard with emphasis on New Zealand (maybe)
deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
deepslide-svs-wsi-to-jpeg-patch-generator
Tool for splitting an image at a specific resolution from a .SVS into .JPEG tiles.
Markdown_Lessons
Introductory Markdown
MattBixley's Repositories
MattBixley/COVID19
COVID19 Dashboard with emphasis on New Zealand (maybe)
MattBixley/Markdown_Lessons
Introductory Markdown
MattBixley/advent_of_code
Advent of Code Solutions - cloned to 2021 but I have done others
MattBixley/bakeR
Bread Recipes
MattBixley/barkley_plots
quick viz to track progress of the annual Barkley 100+ mile race
MattBixley/bioinformatics-spring-school-2020
MattBixley/eri-intro
AgResearch eResearch Infrastruture Demo
MattBixley/eri-ood-rstudio-server-app
(Beta) OOD RStudio-server for app for eRI
MattBixley/eri-support-docs
eri-support-docs
MattBixley/Intermediate-R
MattBixley/latticespins-gpu
MattBixley/merrimanlab.github.io
MattBixley/myPOSITconf
POSIT devop workshop
MattBixley/navsport_tutorials
Nav Sport Tutorials
MattBixley/nesi_r
example R code for the various NeSI platforms
MattBixley/otagocarpentries.github.io
MattBixley/penguin-project
MattBixley/photogallery
GitHub Gallery. A simple tool to show all images in a folder. Only requirement is a GitHub account. Forked from mikelothar/github-gallery
MattBixley/Polls
Mucking around with ggplot2, xkcd and the election
MattBixley/Population-Density-Maps
Using Kontur Population and Rayshader package in R
MattBixley/quarto-workshop
MattBixley/R4biochem
R Lessons for the University of Otago Biochemistry Department
MattBixley/R_functions_and_iterators
MattBixley/RNA-seq-workshop
MattBixley/rogaine_tsp
The Travelling Salesman for Rogaines
MattBixley/shell-for-bioinformatics
Intermediate-Advanced shell for Bioinformatics
MattBixley/shell-genomics
Introduction to the Command Line for Genomics
MattBixley/ST-Net
Deep learning on histopathology images.
MattBixley/tidy_tuesday
A home for some #tidytuesday code, plots table and general upskilling.
MattBixley/workflow_workshop
Example Markdown Workflow