MatteoLacki

MatteoLacki's Stars

• JmWangBio/PepSetTest

  Language:R21

• WojciechMula/pyahocorasick

  Python module (C extension and plain python) implementing Aho-Corasick algorithm

  Language:C931122

• merlin-ms/awesome-mass-spectral-libraries

  102

• midiaIDorg/midia_fetcher

  Language:Python1

• smith-chem-wisc/MetaMorpheus

  Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

  Language:C#9046

• michalsta/std_vector

  C++ std::vector exposed via pybind11

  Language:C++1

• percolator/percolator

  Semi-supervised learning for peptide identification from shotgun proteomics datasets

  Language:C++12736

• theGreatHerrLebert/rustims

  A Framework for IMS-MS Raw Data Processing written in Rust and Python.

  Language:Rust41

• michalsta/mmapped_df

  Language:Python1

• lazear/sage

  Proteomics search & quantification so fast that it feels like magic

  Language:Rust20939

• theGreatHerrLebert/ionmob

  An open-source prediction framework for peptide ion collision cross section (CCS) values with python.

  Language:Python104

• ProteomicsML/ProteomicsML

  Community-curated tutorials and datasets for ML in proteomics

  Language:Jupyter Notebook437

• atksh/python_prtree

  A Python implementation of Priority R-Tree, an alternative to RTree.

  Language:C++212

• theGreatHerrLebert/proteolizard-data

  a collection of tools and wrapper classes for timsTOF data access and processing.

  Language:C++51

• hoffstadt/DearPyGui

  Dear PyGui: A fast and powerful Graphical User Interface Toolkit for Python with minimal dependencies

  Language:C++13k676

• RafaelMiquelino/dash-flask-login

  Implementation of Flask-login on top of Dash.

  Language:Python24781

• Bogdanp/dramatiq

  A fast and reliable background task processing library for Python 3.

  Language:Python4.3k302

• celery/celery

  Distributed Task Queue (development branch)

  Language:Python24.5k4.7k

• pyranges/ncls

  The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.

  Language:C20920

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.2k544

• panoptes-organization/panoptes

  Monitor computational workflows in real time

  Language:CSS6517

• PMCC-BioinformaticsCore/janis

  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

  Language:Python4113

• sixty-north/multiprocessing_on_dill

  A friendly fork of the Python Standard Library multiprocessing package which uses dill instead of pickle

  Language:Python345

• nsgrantham/ggdark

  Dark mode for ggplot2 themes

  Language:R1959

• MatteoLacki/timspy

  Language:Python168

• MatteoLacki/timsr

  TimsR: Easy access to timsTOF Pro data from R.

  Language:R91

• michalsta/opentims

  Open-source C++ and Python module for opening binary timsTOF data files.

  Language:C4312

• mciach/masserstein

  Tools for analysis of Mass Spectrometry data using the Wasserstein metric

  Language:Jupyter Notebook164

• davidgohel/officedown

  Language:R36427

• MatteoLacki/IsoSpec

  Libraries for fine isotopic structure calculator.

  Language:C++3510