Pinned Repositories
buzz
Interactive visualization tool for exploring low-dimensional data embeddings.
deep-learning-biology
This repository contains the notebooks for the exercise sessions of the VIB Deep Learning for Biology workshop
DeepClustering
Codebase for developing and testing deep clustering methods, specifically for imaging flow cytometry data.
riverreliability
Repository for the riverreliability python package. This package provides the riverreliability diagram and PEACE metric, as well as the confidence-reliability diagram and ECE metric.
singlecell-annotator
Manual annotation web app for single cell images.
DeepLearning_for_ImagingFlowCytometry
A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry data.
SCIP
Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
MaximLippeveld's Repositories
MaximLippeveld/buzz
Interactive visualization tool for exploring low-dimensional data embeddings.
MaximLippeveld/DeepClustering
Codebase for developing and testing deep clustering methods, specifically for imaging flow cytometry data.
MaximLippeveld/deep-learning-biology
This repository contains the notebooks for the exercise sessions of the VIB Deep Learning for Biology workshop
MaximLippeveld/riverreliability
Repository for the riverreliability python package. This package provides the riverreliability diagram and PEACE metric, as well as the confidence-reliability diagram and ECE metric.
MaximLippeveld/singlecell-annotator
Manual annotation web app for single cell images.
MaximLippeveld/artistic-heritage-regional-roads-code
Code repository containing code for deriving results from the "Artistic heritage of regional roads" dataset by Brussels Mobility
MaximLippeveld/artistic-heritage-regional-roads-meta
Meta repository containing info about and results derived from the "Artistic heritage of regional roads" dataset by Burssels Mobility
MaximLippeveld/bioformats2raw
Bio-Formats image file format to raw format converter
MaximLippeveld/blog
MaximLippeveld/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
MaximLippeveld/ciflmdb
MaximLippeveld/dambi-hpc-guide
Basic and Advanced usage of High-Performance Computing in Bioinformatics
MaximLippeveld/datasets
TFDS is a collection of datasets ready to use with TensorFlow, Jax, ...
MaximLippeveld/dirichlet_python
MaximLippeveld/django-image-cropping
Django helper application to easily and non-destructively crop arbitrarily large images in admin and frontend.
MaximLippeveld/docker-base
Home Assistant base images
MaximLippeveld/experiments_neurips
MaximLippeveld/features
A collection of Dev Container Features managed by Dev Container spec maintainers. See https://github.com/devcontainers/feature-starter to publish your own
MaximLippeveld/ifcimglib
This is a package for working with imaging cytometry data.
MaximLippeveld/kaat-portfolio-static
Static web content for kaat-portfolio repo.
MaximLippeveld/kitkookt
MaximLippeveld/Local_Hough_Circle
An improved implementation
MaximLippeveld/napari
napari: a fast, interactive, multi-dimensional image viewer for python
MaximLippeveld/neuralnets
This code implements various useful utilities for training neural networks.
MaximLippeveld/pycloudinary
Python package for cloudinary
MaximLippeveld/RDM-LS
Session for Research Data Management in Life Sciences workshop on 10 Nov 2020. Creating and working with a reproducible data analysis environment.
MaximLippeveld/seaborn
Statistical data visualization using matplotlib
MaximLippeveld/single-cell-image-processing
Scalable single cell image processing software built on the SciJava framework. Can be used as ImageJ plugin or standalone CLI.
MaximLippeveld/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
MaximLippeveld/tailwindcss-portfolio-theme
Starter files for a Hugo theme with Tailwindcss