McGranahanLab/TcellExTRECT

Issues

• Frequent zero-infiltration prediction by TcellExTRECT in NSCLC

  #29 opened 4 months ago by bozbezbozzel
  0

• Incompatibility with gratia 0.9.0

  #28 opened 8 months ago by rbentham
  0

• TcellExTRECT in WGS

  #18 opened 3 years ago by Francesc-Muyas
  5

• WGS Instructions Missing

  #3 opened 3 years ago by DarioS
  2

• How I can get the value of TCRA.cn for the function adjustTcellExTRECT

  #26 opened 2 years ago by xiasijian
  0

• Gratia function deprecation

  #25 opened 2 years ago by teerjk
  2

• negative T cell fration?

  #17 opened 3 years ago by stroke1989
  3

• IDT exome support

  #24 opened 2 years ago by BGI2016
  2

• issue in runTcellExTRECT with my own data

  #21 opened 2 years ago by QianhuiXu
  2

• How to get CDR3 coverage information and downsampling to specified depth

  #23 opened 2 years ago by pumpkin-hat
  1

• Some problems about the parameter setting

  #22 opened 2 years ago by Niinleslie
  4

• which kind of input bam

  #20 opened 2 years ago by Niinleslie
  0

• negative values of TCRA.tcell.fraction

  #19 opened 3 years ago by Dagsbio
  2

• Make package available on bioconda

  #16 opened 3 years ago by FriederikeHanssen
  1

• Bam example or simulated bam.

  #15 opened 3 years ago by lincj1994
  1

• failed to generate customed TCRA_exons_hg19

  #14 opened 3 years ago by stroke1989
  3

• runTcellExTRECT returns NA

  #13 opened 3 years ago by anabbi
  2

• Exome kit support

  #10 opened 3 years ago by egeulgen
  4

• error in exonwindowplot2

  #12 opened 3 years ago by egeulgen
  1

• Negative values for TCRA.tcell.fraction

  #11 opened 3 years ago by egeulgen
  4

• Twist exome support

  #9 opened 3 years ago by gbucci
  2

• hg38 error in exons.selected

  #8 opened 3 years ago by gbucci
  1

• Index Not Found But It Exists

  #6 opened 3 years ago by DarioS
  3

• TCRA or TRA

  #5 opened 3 years ago by DarioS
  1

• gratia Dependency

  #4 opened 3 years ago by DarioS
  1

• Purity Number Mistakenly Converted Into A Boolean Value

  #7 opened 3 years ago by DarioS
  1

• data type for 'TCRA_exons_hg38'

  #2 opened 3 years ago by yoshihiko1218
  1