/QDM-QICore-Conversion

This project provides services to convert CMS Quality Data Model(QDM) to FHIR Resources.

Primary LanguageJavaCreative Commons Zero v1.0 UniversalCC0-1.0

QDM-QICore-Conversion

This project provides restful services to convert clinical quality measures authored with CMS developed Measure Authoring Tool (MAT) converting them to Fast Healthcare Interoperable Resources(FHIR) release R4. It utilizes MAT mysql instance as the datasource while reaching out to external systems such as NLMs VSAC to gather valueSets needed for measure evaluation.

Requirements

  1. Java 15
  2. Maven 3.8.3 or higher
  3. MySQL 8.0.26 (Mat DB)
  4. User login to NLM VSAC system via UMLS
  5. (Optional) Docker v20 or higher

Initial Setup

Checking out

Checkout this project

git clone https://github.com/MeasureAuthoringTool/QDM-QICore-Conversion.git

change to the develop branch.

git checkout develop
$ cd QDM-QICore-Conversion

Important Security Setup With Git Secrets

  • Use brew to install git secrets brew install git-secrets
  • Clone this repository (you can skip this if you've already cloned it from previous steps)
  • Note: You may have to reinitialize these hooks each time you clone a new copy of the repo
  • Follow these instructions for setting up the pre-commit hooks:
cd /path/to/QDM-QICore-Conversion
git secrets --install
git secrets --register-aws

Done! Now each commit should be automatically scanned for accidental AWS secret leaks.

Env vars

Edit docker-env.sh and setup all the environment variables to match your environment. Replace all the FIX_ME! entries with the appropriate information.

To load env vars:

. ./docker-env.sh

You can also manually add a line to ~/.bash_profile to load it.

Run the following shell script to setup links for hapi-fhir libraries and value-sets.

./create-links.sh

Maven

Do a clean build of everything. This step is required to ensure Spring Boot can auto-configure the BuildProperties bean.

mvn clean install

or to skip testing

mvn clean install -DskipTests

Docker Compose

Use the docker-compose-build.yml when you want to build containers from all the source code you just built.

docker-compose pull
docker-compose build
docker-compose up

If you get an error running hapi-fhir-jpaserver that looks like this just ignore it its a known issue and not user impacting.

 Error executing DDL "create index IDX_VALUESET_C_DSGNTN_VAL on TRM_VALUESET_C_DESIGNATION (VAL)" via JDBC Statement

Loading valuesets/codes

Run this to setup all the valuesets and codes needed on the hapi-fhir-server. You just need to run this once on a newly setup hapi-fhir-server. curl -X GET "http://localhost:9080/library/find/load" -H "accept: /"

Urls

mat-fhir-services:

hapi-fhir-server:

qdm-qicore-mapping-services:

cql-elm-translation: