Medical-Imaging-Group/Kalyan-M.Sc-Thesis

Kalyan M.ScThesis

Kalyan M.Sc Thesis The following MATLAB programs were used as a part of MSc.(Engg.) thesis submitted.

Thesis Title: Development and Validation of Analytical Models for Diffuse Fluorescence Spectroscopy/Imaging in Regular Geometries.

Kalyan MSc Thesis

Matlab Based Programs (Requires NIRFAST):

1. Source file for Circular Geometry.
   

   • GetPhase.m
     
   • avg_out_values_circle.m
     
   • fem_amp_phase_Circle.m
     
   • load_fem_data_Circle.m
     
   • src_det_dist_Circle.m
     
   • analytical_MTOF_Circle.m
     
   • analytical_data_Circle.m
     
   • fdot_Circle.m
     

   *1. Source file for Cube Geometry.
   

   • avg_out_values.m
     
   • load_fem_data_Cube.m
     
   • fem_amp_phase_Cube.m
     
   • analytical_data_Cube.m
     
   • src_det_dist_Cube.m
     
   • fdot_Cube.m
     

2. Source file for Semi-Infinite Geometry approximation using Slab.
   

   • fem_amp_phase_Slab.m
     
   • avg_out_values.m
     
   • load_fem_data_Slab.m
     
   • analytical_data_Slab.m
     
   • src_det_dist_Slab.m
     
   • dot_Slab.m
     
   • analytical_MTOF_Slab.m
     

3. Source file for Cylindrical Geometry.
   

   • fem_amp_phase_Cylinder.
     
   • avg_out_values_Cylinder.m
     
   • load_fem_data_Cylinder.m
     
   • src_det_dist_Cylinder.m
     
   • fdot_Cylinder.m
     
   • analytical_data_Cylinder.m
     

   *1. Source file for Spherical Geometry.
   

   • src_det_dist_Sphere.m
     
   • fem_amp_phase_Sphere.m
     
   • avg_out_values_Sphere.m
     
   • load_fem_data_Sphere.m
     
   • analytical_MTOF_Sphere.m
     
   • fdot_Sphere.m
     
   • analytical_data_Sphere.m
     

   *2. Source file for MTOF calculation.
   

   • save_trdata.m
     
   • load_trdata.m
     
   • TR_data.m
     
   • TPSF.m
     
   • plot_mtof.m
     
   • fem_MeanTimeOfFlight.m
     
   • Tau_Vary.m
     
   • AllGeom_MTOF.m
     

4. Source file for Patient Mesh.
   

   • fem_amp_phase_pat.m
     
   • avg_out_values.m
     
   • load_fem_data_pat.m
     
   • analytical_data_pat.m
     
   • uniform_fl_mesh.m
     
   • convert_fl_mesh.m
     
   • fdot_pat.m
     

5. Files performing generic functions.
   

   • run_simulations.m
     
   • TOF_plots.m
     
   • params.m
     
   • setup.m
     
   • meshes.m
     
   • Flux_plots.m
     
   • MTOF_plots.m
     
   • get_brs_rad.m
     
   • Cube_PAT.m
     

6. Meshes to verify the fluorescence computation in NIRFAST.

   1.Directory Structure for source o be integrated in NIRFAST.