Pinned Repositories
DeepLearning4All
ImageRegistrationTutorial
This project is to help students and researchers to learn the theory of medical image registration in a simple and practical way. I will try to explain the math using simple language and python code. The tutorials are python notebook based that you can run directly in Google colab. Your correction, feedback, and support are more than welcome!
instantMeshes
Interactive field-aligned mesh generator
MutualInformationTutorial
A simple tutorial of mutual information for images
nnDetection
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
opensim-core
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
SlicerCervicalSpine
SlicerCochlea
Multi-modal cochlea Images registration, segmentation and analysis
SlicerMeshing
ReMeshing using instant meshes and robust-hexa dominant meshes
TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT images
MedicalImageAnalysisTutorials's Repositories
MedicalImageAnalysisTutorials/ImageRegistrationTutorial
This project is to help students and researchers to learn the theory of medical image registration in a simple and practical way. I will try to explain the math using simple language and python code. The tutorials are python notebook based that you can run directly in Google colab. Your correction, feedback, and support are more than welcome!
MedicalImageAnalysisTutorials/SlicerCochlea
Multi-modal cochlea Images registration, segmentation and analysis
MedicalImageAnalysisTutorials/SlicerCervicalSpine
MedicalImageAnalysisTutorials/DeepLearning4All
MedicalImageAnalysisTutorials/MutualInformationTutorial
A simple tutorial of mutual information for images
MedicalImageAnalysisTutorials/TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT images
MedicalImageAnalysisTutorials/nnDetection
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
MedicalImageAnalysisTutorials/nnUNet
MedicalImageAnalysisTutorials/SlicerNotebooks
Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python
MedicalImageAnalysisTutorials/abdominal_registration
Deep learning based registration for Learn2Reg Challenge (Task 3 : CT Abdominal)
MedicalImageAnalysisTutorials/ADLReg
Our(team: winter) solutions for MICCAI Learn2Reg 2021.
MedicalImageAnalysisTutorials/BezierInfo-2
The development repo for the Primer on Bézier curves, https://pomax.github.io/bezierinfo
MedicalImageAnalysisTutorials/cochlea_segmentation_docker_monai
MedicalImageAnalysisTutorials/DeepReg
Medical image registration using deep learning
MedicalImageAnalysisTutorials/ElastixModelZoo
Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix
MedicalImageAnalysisTutorials/FaceDetection
Face Detection using ViolaJones on the CBCL Face Database
MedicalImageAnalysisTutorials/ITKElastix
An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
MedicalImageAnalysisTutorials/MedicalDataAugmentationTool
MedicalImageAnalysisTutorials/MedicalDataAugmentationTool-CellTracking
MedicalImageAnalysisTutorials/MedicalDataAugmentationTool-HeatmapUncertainty
MedicalImageAnalysisTutorials/MedicalDataAugmentationTool-VerSe
MedicalImageAnalysisTutorials/SlicerSegmentationRecipes
Recipes for common medical image segmentation tasks using 3D Slicer
MedicalImageAnalysisTutorials/SlicerTotalSegmentator
Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model
MedicalImageAnalysisTutorials/transforms3d
3 dimensional spatial transformations
MedicalImageAnalysisTutorials/UniverSeg
UniverSeg: Universal Medical Image Segmentation
MedicalImageAnalysisTutorials/Unpaired_MR_to_CT_Image_Synthesis
Whole-body MR to CT image mapping
MedicalImageAnalysisTutorials/Unsupervised-Domain-Adaptation-Framework-for-Vestibular-Schwannoma-and-Cochlea-Segmentation
An improved framework that performs domain adaptation on Vestibular Schwannomas and cochlea segmentation
MedicalImageAnalysisTutorials/verse
Everything about the 'Large Scale Vertebrae Segmentation Challenge' @ MICCAI 2019-2020
MedicalImageAnalysisTutorials/VisSimData
models and sample datasets needed for Slicer VisSim extensions
MedicalImageAnalysisTutorials/YOLOv8-Medical-Imaging
This project uses YOLOv8 to perform tasks like classification, detection, and segmentation in medical images through a user-friendly interface.