MelanieCHay

MelanieCHay's Stars

• segrelab/MiCoNE

  The Microbial Co-occurrence Network Explorer

  Language:Python194

• stefpeschel/NetCoMi

  Network construction, analysis, and comparison for microbial compositional data

  Language:R15728

• SegataLab/lefse

  Language:Python7846

• tseemann/abricate

  :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

  Language:Perl38093

• EmilHvitfeldt/r-color-palettes

  Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

  Language:R1.5k139

• kbroman/Talk_Graphs

  Talk: How to display data badly

  Language:R9944

• sib-swiss/training-collection

  Collection of bioinformatics training materials

  Language:Python989183

• jodyphelan/genomics_course

  Language:JavaScript113

• KaibondChau/ampliseek

  AmpliSeq AMR panel mapper tool

  Language:Python2

• genomicsclass/dagdata

  Data for the HarvardX courses: PH525x

  Language:R270701

• genomicsclass/labs

  Rmd source files for the HarvardX series PH525x

  Language:R2k2k

• WrightonLabCSU/DRAM

  Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

  Language:Python26152

• harvardinformatics/bioinformatics-coffee-hour

  Short lessons from FAS Informatics coffee hour

  Language:HTML14348

• kassambara/rstatix

  Pipe-friendly Framework for Basic Statistical Tests in R

  Language:R45151

• bioinformatics-centre/kaiju

  Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

  Language:C27367

• marcelm/cutadapt

  Cutadapt removes adapter sequences from sequencing reads

  Language:Python528132

• FelixKrueger/TrimGalore

  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

  Language:Perl479150

• LangilleLab/microbiome_helper

  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

  Language:Python438204

• biovcnet/biovcnet.github.io

  Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

  Language:HTML5924

• cchrysostomou/seqtables

  Tools for analyzing NGS sequence data and aligned protein sequences

  Language:Python52

• BU-ISCIII/plasmidID

  PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

  Language:Shell388

• Geo-omics/scripts

  Metagenomic pipeline and other general scripts used in the lab.

  Language:Perl3522

• daattali/ggExtra

  📊 Add marginal histograms to ggplot2, and more ggplot2 enhancements

  Language:R38445

• ggobi/ggally

  R package that extends ggplot2

  Language:R591119

• poyuliu/KTU

  KTU: K-mer-based taxonomic clustering algorithm improves biological relevance in microbiome associated study

  Language:R5

• benjjneb/dada2

  Accurate sample inference from amplicon data with single nucleotide resolution

  Language:R479144

• joey711/phyloseq

  phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

  Language:R591187

• hms-dbmi/UpSetR

  An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

  Language:R766158

• wilkelab/cowplot

  cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2

  Language:R70984

• erikgahner/awesome-ggplot2

  A curated list of awesome ggplot2 tutorials, packages etc.

  1.6k170