Pinned Repositories
cpipe
The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
dx-asset-bedtools
Bedtools asset for DNA Nexus
dx-asset-vep-cache
hg38 Vep Cache
dx-toolkit
DNAnexus platform client libraries
dx-vep
A VEP (Ensembl Variant Effect Predictor) app for the DNA Nexus Platform
gap_analysis
Finds overall gaps in multiple aligned samples
iq
QC generation system
pandas_diff
Joins two CSVs by an arbitrary index and calculates where they differ
python-assets
A python 3 module for managing and installing assets from various sources
UcscBed
A bioinformatics library that provides a CLI and API for creating a BED file out of the UCSC refseq genes list
MelbourneGenomics's Repositories
MelbourneGenomics/cpipe
The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
MelbourneGenomics/dx-asset-bedtools
Bedtools asset for DNA Nexus
MelbourneGenomics/dx-asset-vep-cache
hg38 Vep Cache
MelbourneGenomics/dx-vep
A VEP (Ensembl Variant Effect Predictor) app for the DNA Nexus Platform
MelbourneGenomics/dx-toolkit
DNAnexus platform client libraries
MelbourneGenomics/gap_analysis
Finds overall gaps in multiple aligned samples
MelbourneGenomics/iq
QC generation system
MelbourneGenomics/pandas_diff
Joins two CSVs by an arbitrary index and calculates where they differ
MelbourneGenomics/python-assets
A python 3 module for managing and installing assets from various sources
MelbourneGenomics/UcscBed
A bioinformatics library that provides a CLI and API for creating a BED file out of the UCSC refseq genes list
MelbourneGenomics/anonymise
A program to edit fields in a bam file
MelbourneGenomics/BrokenWorkflow
Generates a DNAnexus workflow that is broken (has a missing stage), for testing purposes
MelbourneGenomics/chrReplace
Adds or removes "chr" prefixes from a column of a CSV (e.g. GFF/BED files)
MelbourneGenomics/groovy-hts-sample-info
MelbourneGenomics/groovy-ngs-utils
A collection of utilities for working with next generation (MPS) sequencing data in Groovy
MelbourneGenomics/h3agatk