MerRome

MerRome's Stars

• erikgahner/awesome-ggplot2

  A curated list of awesome ggplot2 tutorials, packages etc.

  1.5k164

• Teichlab/innate_evo

  Language:R122

• crazyhottommy/scRNAseq-analysis-notes

  scRNAseq analysis notes from Ming Tang

  613153

• constantAmateur/SoupX

  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

  Language:R25334

• vanheeringen-lab/scepia

  Single Cell Epigenome-based Inference of Activity

  Language:Jupyter Notebook192

• wmacnair/SampleQC

  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data

  Language:R353

• kstreet13/bioc2020trajectories

  Trajectory inference and differential expression over multiple conditions in scRNA-seq

  Language:R256

• jhsiao999/peco

  Predict cell cycle phase in a continuum from single-cell RNA-seq data

  Language:R124

• neocaleb/TENET

  TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.

  Language:Python358

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.2k530

• wmacnair/psupertime

  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels

  Language:R3413

• wmacnair/psupplementary

  Supplementary data and analyses for the package psupertime

  Language:R3

• dpcook/emt_dynamics

  Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"

  178

• chris-mcginnis-ucsf/MULTI-seq

  R implementation of MULTI-seq sample classification workflow

  Language:R5710

• Hoohm/CITE-seq-Count

  A tool that allows to get UMI counts from a single cell protein assay

  Language:Python7544

• statOmics/tradeSeq

  TRAjectory-based Differential Expression analysis for SEQuencing data

  Language:HTML23227