MetExplore

Pinned Repositories

cobratoolbox-lib
COBRA Toolbox without submodules and minor modifications to improve reproducibility
Language:MATLAB0 4 00
computeDistanceMatrix
Language:Java0 2 00
container-computeDistanceMatrix
Language:Shell0 2 01
container-PathwayEnrichment
Language:Shell0 2 00
dexom
Diversity-based enumeration of optimal context-specific metabolic networks
Language:MATLAB5 6 31
dexom-evaluation
DEXOM submodule with data for evaluation
Language:Jupyter Notebook0 4 00
dexom-python
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
Language:Python1 5 00
met4j
Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks. It also came with a toolbox gathering CLI for several analyses relevant to metabolism-related research.
Language:Java1 5 00
miom
Constraint-based modeling of metabolism using Mixed Integer Optimization
Language:Python11 4 172
phnmnl-FingerprintClustering
Performs unsupervised clustering among a metabolic network from a fingerprint
Language:R1 2 00

MetExplore's Repositories

MetExplore/miom
Constraint-based modeling of metabolism using Mixed Integer Optimization
Language:Python11 4 172
MetExplore/dexom
Diversity-based enumeration of optimal context-specific metabolic networks
Language:MATLAB5 6 31
MetExplore/dexom-python
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
Language:Python1 5 00
MetExplore/met4j
Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks. It also came with a toolbox gathering CLI for several analyses relevant to metabolism-related research.
Language:Java1 5 00
MetExplore/phnmnl-FingerprintClustering
Performs unsupervised clustering among a metabolic network from a fingerprint
Language:R1 2 00
MetExplore/cobratoolbox-lib
COBRA Toolbox without submodules and minor modifications to improve reproducibility
Language:MATLAB0 4 00
MetExplore/computeDistanceMatrix
Language:Java0 2 00
MetExplore/container-computeDistanceMatrix
Language:Shell0 2 01
MetExplore/container-PathwayEnrichment
Language:Shell0 2 00
MetExplore/dexom-evaluation
DEXOM submodule with data for evaluation
Language:Jupyter Notebook0 4 00
MetExplore/MetaboliteIDConverter
Language:Java0 2 00
MetExplore/metexplore2_maintenance
Language:HTML0 4 20
MetExplore/MetExploreViz
Language:JavaScript0 5 10
MetExplore/phnmnl-PathwayEnrichment
pathway enrichment tool for Docker containerization into Galaxy PhenoMeNal instance
Language:Java0 2 00
MetExplore/tool-PathwayEnrichment
Language:Java0 2 00
MetExplore/tool-SBML2MetexploreJsonGraph
Language:Java0 2 00