Pinned Repositories
absQuant
Calculate absolute concentrations for metabolites using calibration curve data
advance-XCMS
GUI for manual re-integration
batchCorrection
R scripts using HARMAN to correct batch effects in LC/GC-MS data
bioconda-recipes
Conda recipes for the bioconda channel.
blakc
blak
boxplot_reports
Python notebook to produce boxplot reports
galaxy-metabolomics
Scripts/tools for galaxy.
ma-binf-wiki
Metabolomics Aus wiki
MonitoringSystem
my_vignettes
A bunch of vignettes for various analysis
MetabolomicsAustralia-Bioinformatics's Repositories
MetabolomicsAustralia-Bioinformatics/galaxy-metabolomics
Scripts/tools for galaxy.
MetabolomicsAustralia-Bioinformatics/ma-binf-wiki
Metabolomics Aus wiki
MetabolomicsAustralia-Bioinformatics/batchCorrection
R scripts using HARMAN to correct batch effects in LC/GC-MS data
MetabolomicsAustralia-Bioinformatics/MonitoringSystem
MetabolomicsAustralia-Bioinformatics/my_vignettes
A bunch of vignettes for various analysis
MetabolomicsAustralia-Bioinformatics/absQuant
Calculate absolute concentrations for metabolites using calibration curve data
MetabolomicsAustralia-Bioinformatics/advance-XCMS
GUI for manual re-integration
MetabolomicsAustralia-Bioinformatics/bioconda-recipes
Conda recipes for the bioconda channel.
MetabolomicsAustralia-Bioinformatics/blakc
blak
MetabolomicsAustralia-Bioinformatics/boxplot_reports
Python notebook to produce boxplot reports
MetabolomicsAustralia-Bioinformatics/git-workshop
git workshop
MetabolomicsAustralia-Bioinformatics/boxplot_reports_v3
Clean, stable version of a flask app for boxplot reports.
MetabolomicsAustralia-Bioinformatics/ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.
MetabolomicsAustralia-Bioinformatics/maca-utils
bunch of utility fuctions.
MetabolomicsAustralia-Bioinformatics/metabio
MetabolomicsAustralia-Bioinformatics/pathway-shinyapp
shinyapp for pathway visualization
MetabolomicsAustralia-Bioinformatics/Project
MetabolomicsAustralia-Bioinformatics/push-pull-test
Practice repo to push and pull to fromprod.
MetabolomicsAustralia-Bioinformatics/push-pull-test2
Another test repo
MetabolomicsAustralia-Bioinformatics/rcca
Exploring how rcca works with various packages
MetabolomicsAustralia-Bioinformatics/sauer_flaskapp
Web app implementing Sauer enrichment.
MetabolomicsAustralia-Bioinformatics/SauerEnrichmentAnalysis
Functions for implementation of Sauer isotope labeling calculation
MetabolomicsAustralia-Bioinformatics/smp-mapper-metab
Visualizing stuff on PathBank svgs