MetazoaPhylogenomicsLab
Lab repo for the code and data produced in the Metazoa Phylogenomics Lab led by Rosa Fernández @IBE, Barcelona, Spain
Institute of Evolutionary Biology (Spanish National Research Council - University Pompeu Fabra)Barcelona
Pinned Repositories
Aristide_Fernandez_2022_mollusk_terrestrialization
Balart_Garcia_et_al_2021_MolecularEcology
Repository of code and data for the manuscript Balart-Garcia et al. 2021. Smelling in the dark: phylogenomic insights into the chemosensory system of a subterranean beetle. https://doi.org/10.1111/mec.15921
Balart_Garcia_et_al_2023_chemosensory_gene_repertoire_cave_beetles
Data and code related to the manuscript Balart-García et al. 2022. Highly dynamic evolution of the chemosensory gene repertoire driven by gene gain and expansion across subterranean beetles (under review).
constellatoR
R package constellatoR to check functional convergence in long lists of Gene Ontology terms and orthogroups
FANTASIA
Martinez_Redondo_et_al_2023_aquaporins
Martinez_Redondo_et_al_2024_Dark_Proteome_Animal_Tree_Of_Life
MATEdb
MATEdb, a data repository of high-quality metazoan transcriptome assemblies to accelerate phylogenomic studies
MATEdb2
Vargas-Chavez_et_al_2024_Chromosome_shattering_clitellate_origins
Repository for code and files related to the manuscript Vargas-Chávez et al. 2024. A punctuated burst of massive genomic rearrangements by chromosome shattering and the origin of non-marine annelids
MetazoaPhylogenomicsLab's Repositories
MetazoaPhylogenomicsLab/FANTASIA
MetazoaPhylogenomicsLab/constellatoR
R package constellatoR to check functional convergence in long lists of Gene Ontology terms and orthogroups
MetazoaPhylogenomicsLab/Vargas-Chavez_et_al_2024_Chromosome_shattering_clitellate_origins
Repository for code and files related to the manuscript Vargas-Chávez et al. 2024. A punctuated burst of massive genomic rearrangements by chromosome shattering and the origin of non-marine annelids
MetazoaPhylogenomicsLab/Balart_Garcia_et_al_2021_MolecularEcology
Repository of code and data for the manuscript Balart-Garcia et al. 2021. Smelling in the dark: phylogenomic insights into the chemosensory system of a subterranean beetle. https://doi.org/10.1111/mec.15921
MetazoaPhylogenomicsLab/Martinez_Redondo_et_al_2024_Dark_Proteome_Animal_Tree_Of_Life
MetazoaPhylogenomicsLab/Martinez_Redondo_et_al_2023_aquaporins
MetazoaPhylogenomicsLab/MATEdb
MATEdb, a data repository of high-quality metazoan transcriptome assemblies to accelerate phylogenomic studies
MetazoaPhylogenomicsLab/MATEdb2
MetazoaPhylogenomicsLab/Aristide_Fernandez_2022_mollusk_terrestrialization
MetazoaPhylogenomicsLab/Balart_Garcia_et_al_2023_chemosensory_gene_repertoire_cave_beetles
Data and code related to the manuscript Balart-García et al. 2022. Highly dynamic evolution of the chemosensory gene repertoire driven by gene gain and expansion across subterranean beetles (under review).
MetazoaPhylogenomicsLab/Balart_Garcia_et_al_2023_gene_repertoire_evolution_subterranean_coleoptera
Data and code from the paper Balart-García et al. 2023. Parallel and convergent genomic changes underlie independent subterranean colonization across beetles. Nature Communications 14: 3842.
MetazoaPhylogenomicsLab/ChromosomeLevelGenomes
Repository with chromosome-level genome assemblies and annotation generated in the Metazoa Phylogenomics Lab.