Pinned Repositories
1000_genomes_examples
Examples using R and 1000 genomes data
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
AgentBind
atlantis
Code used for biomarker discovery using party (building conditional random forests)
CADD-scripts
CADD scripts release for offline scoring. For more information about CADD, please visit our website
ccr
Building the constrained coding regions (CCR) model
ccrhtml
A small repo for storing the code for making the files and html for CCRs.
CS31projects
projects for CS31 Spring 2018 @ UCLA
MAPPING
ChemoProteomic-Detected Amino Acids (CpDAAs) to missense deleteriousness predictions and ClinVar pathogenic mutations
WGS
Mfpfox's Repositories
Mfpfox/MAPPING
ChemoProteomic-Detected Amino Acids (CpDAAs) to missense deleteriousness predictions and ClinVar pathogenic mutations
Mfpfox/1000_genomes_examples
Examples using R and 1000 genomes data
Mfpfox/CADD-scripts
CADD scripts release for offline scoring. For more information about CADD, please visit our website
Mfpfox/ccr
Building the constrained coding regions (CCR) model
Mfpfox/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
Mfpfox/Clustering-Mixed-Data
A repository with various methods for clustering mixed datasets in python
Mfpfox/ClustVis
ClustVis web tool
Mfpfox/dbnsfp-javasearch
Mfpfox/DCell
DCell browser and gene deletion simulator
Mfpfox/dnaplotlib
DNA plotting library for Python
Mfpfox/dsbook
Repository for data science book
Mfpfox/gene_lists
List of gene lists for genomic analyses.
Mfpfox/gnomad-browser
Mfpfox/gnomad_methods
Hail helper functions for the gnomAD project and Translational Genomics Group
Mfpfox/gnomad_qc
Mfpfox/GraphBio
GraphBio: a shiny web app to easily perform popular visualization analysis for omics data
Mfpfox/LIST
Local Identity and Shared Taxa
Mfpfox/machine-learning
Practical Full-Stack Machine Learning
Mfpfox/mapResidueFeatures
Mfpfox/MISCASTv1.0
Mfpfox/mmtf-genomics
Methods for mapping genomic data onto 3D protein structure.
Mfpfox/MutScore
Mfpfox/pathoscore
pathoscore evaluates variant pathogenicity tools and scores.
Mfpfox/PERs
Pathogenic variant enriched regions tutorial, examples and additional files
Mfpfox/PLOTS
Mfpfox/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
Mfpfox/r4ds
R for data science: a book
Mfpfox/Targeted_Literature_Reviews_via_webscraping
Web scraping to get articles for a given query. It returns an spreadsheet with titles, abstracts, doi and references of the article
Mfpfox/VPOT
VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.
Mfpfox/WGS