MicTott/Resources-for-in-vivo-ephys

A curated list of resources for learning in vivo electrophysiology. Everything including biological underpinnings, theory, implementation, and analysis

Resources for learning in vivo electrophysiology

Implementation / Recordings

• Dr. Luke Sjulson's methods class - excellent resource for learning all about in vivo ephys recordings and other cutting edge neuroscience techniques. Also contains an entire lecture on spike sorting.

• The Axon Guide - a biophysical guide for ephys with a focus on in vitro slice recordings

• Large-scale recording of neuronal ensembles - a review which compares and contrasts common electrode designs

Biological / Theoretical Underpinnings

• Rhythms of the Brain - a classic book written by one of the leaders in the field of oscillations and the neural code, Gyorgy Buzsaki

• The origin of extracellular fields and currents - EEG, ECoG, LFP, and spikeshttps - one the most comprehensive resources for the biological/theoretical underpinnings of electrophysiological signals

• Mechanisms of Gamma Oscillations

• Neuronal Oscillations in Cortical Networks

• Theta Oscillations in the Hippocampus

Digital Signal Processing

• Open Resources for Digital Signal Processing

Neural Data Analysis

• Case Studies in Neural Data Analysis, by Mark Kramer and Uri Eden

• Neural Signal Processing course by Richard Gao

• Vandermeer Lab resources

• Spike sorting by Rodrigo Quiroga

• A more in-depth guide on spike sorting

• A review on methods for spike sorting

• Analyzing Neural Time Series Data

• Investigating large-scale brain dynamics using field potential recordings: analysis and interpretation

• Analysis of Neural Data