MicTott

MicTott's Stars

• ShanechiLab/PyPSID

  Preferential Subspace Identification Algorithm

  Language:Jupyter Notebook487

• ShanechiLab/PSID

  Preferential Subspace Identification Algorithm

  Language:MATLAB449

• dmcable/spacexr

  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

  Language:HTML30273

• igrabski/sc-SHC

  Significance analysis for clustering single-cell RNA-sequencing data

  Language:HTML9310

• lambdamoses/SFEWorkshop

  Language:Dockerfile1

• LieberInstitute/BLA_crossSpecies

  Collaboration between Costa, Martinowich, and Hicks labs investigating basolateral amygdala cell-types across huamn and non-human primate species.

  Language:R1

• MicTott/SpotSweeper

  Spatially-aware quality control for spatial transcriptomics

  Language:R3

• davetang/learning_docker

  Learning about Docker.

  Language:Dockerfile5217

• mcanouil/awesome-quarto

  A curated list of Quarto talks, tools, examples & articles! Contributions welcome!

  1.7k118

• flatironinstitute/nemos

  NEural MOdelS, a statistical modeling framework for neuroscience.

  Language:Python808

• neurorestore/Augur

  Cell type prioritization in single-cell data

  Language:R10112

• egpivo/SpatPCA

  R Package: Regularized Principal Component Analysis for Spatial Data

  Language:R191

• lindermanlab/PPSeq.jl

  Neyman-Scott point process model to identify sequential firing patterns in high-dimensional spike trains

  Language:Julia6215

• carmonalab/GeneNMF

  Methods to discover gene programs on single-cell data

  Language:R743

• biomap-research/scFoundation

  Language:Jupyter Notebook25738

• LieberInstitute/DeconvoBuddies

  Helper Functions for LIBD Deconvolution

  Language:R31

• flatironinstitute/dendro-old

  Analyze neuroscience data in the cloud

  Language:TypeScript192

• esi-neuroscience/syncopy

  Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

  Language:Python4714

• Papatheodorou-Group/scGOclust

  Gene ontology terms to compare single cell RNA-seq data

  Language:R8

• arthur-pe/slicetca

  Library to perform Slice Tensor Component Analysis (sliceTCA)

  Language:Jupyter Notebook354

• seqscope/ficture

  Language:Python263

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.2k636

• snap-stanford/SATURN

  Language:Jupyter Notebook10617

• kundajelab/deeplift

  Public facing deeplift repo

  Language:Python823164

• zdebruine/singlet

  Single-cell analysis with non-negative matrix factorization

  Language:C++4113

• ahwillia/tensortools

  A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA

  3212

• artyomovlab/dualsimplex

  NMF and complete deconvolution algorithm

  Language:R51

• constantAmateur/SoupX

  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

  Language:R25735

• neuroinformatics-unit/quarto-presentation-template

  Language:SCSS9

• neuroinformatics-unit/slides-behavioural-projects-overview

  Slides giving an overview of NIU's behavioural analysis projects.

  Language:Mermaid7