MikeWLloyd

Pinned Repositories

gbrs
Genotype-free genome reconstruction and ASE quantification
Language:Python8 7 53
STRprofiler
A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.
Language:HTML3 5 231
Locus-Coverage-Heatmap
Language:R0 2 00
PartitionedGeneTree
Language:Perl1 2 11
Python_DockerBuild
Language:Dockerfile1 2 00
Sequencing-Coverage-Scripts
Language:Python1 2 11
strprofiler_shiny
Language:Python1 1 00
Tree-Tip-Replacer
Language:Perl1 2 00
tumor-volume-shiny
Language:CSS0 1 00
cs-nf-pipelines
The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines
Language:Nextflow20 5 1310

MikeWLloyd's Repositories

MikeWLloyd/PartitionedGeneTree
Language:Perl1 2 11
MikeWLloyd/Python_DockerBuild
Language:Dockerfile1 2 00
MikeWLloyd/Sequencing-Coverage-Scripts
Language:Python1 2 11
MikeWLloyd/strprofiler_shiny
Language:Python1 1 00
MikeWLloyd/Tree-Tip-Replacer
Language:Perl1 2 00
MikeWLloyd/beardedspice
Mac Media Keys for the Masses
Language:Objective-C0 2 00
MikeWLloyd/biopython
Official git repository for Biopython (converted from CVS)
Language:Python0 2 00
MikeWLloyd/CodingInPythonExercises
This is an introductory repository.
Language:Python0 2 00
MikeWLloyd/Locus-Coverage-Heatmap
Language:R0 2 00
MikeWLloyd/tumor-volume-shiny
Language:CSS0 1 00
MikeWLloyd/WETA_Widget
Language:Python0 2 00
MikeWLloyd/contig-map-build-consensus
Language:Python2 01
MikeWLloyd/ElConcatenero
Language:Python
MikeWLloyd/emase-zero
C++ Implementation of EMASE
Language:C++0 0
MikeWLloyd/fusion-report
Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/
Language:Python
MikeWLloyd/g2gtools
Personal diploid genome creation and coordinate conversion
Language:Python
MikeWLloyd/gbrs
Genotype-free genome reconstruction and ASE quantification
Language:Python0 0
MikeWLloyd/gem3-mapper
GEM-Mapper v3
MikeWLloyd/JAFFA
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
Language:C++
MikeWLloyd/MikeWLloyd
1 0
MikeWLloyd/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:JavaScript
MikeWLloyd/proc-multi-probe-hit
Language:Python2 2
MikeWLloyd/r-devtools
Docker image - r-base + devtools
Language:R1 0
MikeWLloyd/rnafusion
RNA-seq analysis pipeline for detection gene-fusions
Language:Nextflow1 0
MikeWLloyd/Sherman
A simple Bisulfite FastQ Read Simulator (BiQRS)
Language:Perl1 0
MikeWLloyd/shiny_tables
Bootstrap Tables from Dataframes for Shiny for Python
Language:Python0 0
MikeWLloyd/splicing-pipelines-nf
Repository for the Anczukow-Lab splicing pipeline
Language:Nextflow0 0
MikeWLloyd/strprofiler
A simple python utility to compare short tandem repeat (STR) profiles.
MikeWLloyd/Utility-Scripts
Language:Shell2 1