Pinned Repositories
datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
element-moseq
DataJoint Element for Motion Sequencing with Keypoint-MoSeq
aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
BluePyOpt
Blue Brain Python Optimisation Library
datajoint-docs
DataJoint Documentation
datajoint-python
Relational data pipelines for the science lab
datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
db-programming-with-datajoint
A series of notebooks accompanying video tutorials
Multimodal-optimization-for-fitting-cerebellar-GrCs
Source code, results and analysis of the resulting population of neurons from the article 'On the use of a multimodal optimizer for fitting neuron models. Application to the cerebellar granule cell. (2021) Front. in Neuroinf.
MilagrosMarin's Repositories
MilagrosMarin/aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
MilagrosMarin/BluePyOpt
Blue Brain Python Optimisation Library
MilagrosMarin/datajoint-docs
DataJoint Documentation
MilagrosMarin/datajoint-python
Relational data pipelines for the science lab
MilagrosMarin/datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
MilagrosMarin/db-programming-with-datajoint
A series of notebooks accompanying video tutorials
MilagrosMarin/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
MilagrosMarin/element-array-ephys
DataJoint Element for Neuropixels analysis with Kilosort
MilagrosMarin/element-calcium-imaging
DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
MilagrosMarin/element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
MilagrosMarin/element-electrode-localization
DataJoint Element for localizing Neuropixels electrodes
MilagrosMarin/element-miniscope
DataJoint Element for miniscope calcium imaging analysis with CaImAn
MilagrosMarin/keypoint-moseq
MilagrosMarin/microns_phase3_nda
nda schema for MICrONS phase3
MilagrosMarin/Multimodal-optimization-for-fitting-cerebellar-GrCs
Source code, results and analysis of the resulting population of neurons from the article 'On the use of a multimodal optimizer for fitting neuron models. Application to the cerebellar granule cell. (2021) Front. in Neuroinf.
MilagrosMarin/workflow-deeplabcut
Example DataJoint workflow for behavioral analysis with DeepLabCut
MilagrosMarin/element-animal
DataJoint Element for animal management
MilagrosMarin/element-event
DataJoint Element for event-based behavior experiments
MilagrosMarin/element-facemap
DataJoint Element for behavioral analysis with Facemap
MilagrosMarin/element-interface
Common functions for the DataJoint Elements
MilagrosMarin/element-lab
DataJoint Element for lab management
MilagrosMarin/element-moseq
DataJoint Element for Motion Sequencing with Keypoint-MoSeq
MilagrosMarin/element-optogenetics
DataJoint Element for optogenetic experiments
MilagrosMarin/element-session
DataJoint Element for session management
MilagrosMarin/element-zstack
DataJoint Element for volumetric data analysis using Cellpose
MilagrosMarin/MilagrosMarin
MilagrosMarin/moseq2-app
MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.
MilagrosMarin/STAR
RNA-seq aligner