The package implements Bayesian Linear Regression for DE and library size normalization for single-cell RNA sequencing.
The package is based on PyTorch and the probabilistic programming language Pyro and provides seamingless integration with CUDA and SVI/HMC.
One day… maybe…
You can install the released version of SVDE
from
GitHub with:
# install.packages("devtools")
devtools::install_github("militeee/SVDE")
Salvatore Milite, MSc. Fondazione Human Technopole, Milano, Italy.