/SVDE

A SVI based Bayesian linear model for scRNA-seq DE

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

SVDE

Lifecycle:Experimental

The package implements Bayesian Linear Regression for DE and library size normalization for single-cell RNA sequencing.

The package is based on PyTorch and the probabilistic programming language Pyro and provides seamingless integration with CUDA and SVI/HMC.

Citation

One day… maybe…

Help and support

Installation

You can install the released version of SVDE from GitHub with:

# install.packages("devtools")
devtools::install_github("militeee/SVDE")

Copyright and contacts

Salvatore Milite, MSc. Fondazione Human Technopole, Milano, Italy.