MindTheGap: Quantifying the completeness of the stratigraphic record and its role in reconstructing the tempo and mode of evolution
European Research Council Starting Grant
Netherlands
Pinned Repositories
admtools
Estimate Age-Depth Models and Transform Data
CarboCATLite
CarboCATLite model by Peter Burgess
CarboKitten.jl
Julia implementation of carbonate platform model
DarwinCAT
Shiny app visualizing the effects of carbonate stratigraphy on trait evolution
LMA-Matlab
Matlab implementation of the model by L'Heureux (2018) generating self-organized Limestone-Marl Alternations
preservation-orbital-forcing-carbonate-successions
Preservation of Orbital Forcing in Incomplete Carbonate Successions
reactive-transport-model-for-limestone-marl-sequences
Integrating diagenetic equations using Python, inspired by LMA-Matlab, which was created by Niklas Hohmann
stratcols
Stratigraphic columns in R
StratPal
R package for Stratigraphic Paleobiology
StratPal_paleoverse_materials
Materials and examples for the Paleoverse lecture "Building modeling pipelines for stratigraphic paleobiology in R" (Oct 31st 2024)
MindTheGap: Quantifying the completeness of the stratigraphic record and its role in reconstructing the tempo and mode of evolution's Repositories
MindTheGap-ERC/admtools
Estimate Age-Depth Models and Transform Data
MindTheGap-ERC/CarboKitten.jl
Julia implementation of carbonate platform model
MindTheGap-ERC/CarboCATLite
CarboCATLite model by Peter Burgess
MindTheGap-ERC/DarwinCAT
Shiny app visualizing the effects of carbonate stratigraphy on trait evolution
MindTheGap-ERC/stratcols
Stratigraphic columns in R
MindTheGap-ERC/anchoring-late-devonian-mass-extinction
Code and data for
MindTheGap-ERC/Cross-comparison
Comparing the outputs of implementations of the diagenetic model by Ivan L'Heureux (2018)
MindTheGap-ERC/LMA-Matlab
Matlab implementation of the model by L'Heureux (2018) generating self-organized Limestone-Marl Alternations
MindTheGap-ERC/reactive-transport-model-for-limestone-marl-sequences
Integrating diagenetic equations using Python, inspired by LMA-Matlab, which was created by Niklas Hohmann
MindTheGap-ERC/StratPal
R package for Stratigraphic Paleobiology
MindTheGap-ERC/StratPal_paleoverse_materials
Materials and examples for the Paleoverse lecture "Building modeling pipelines for stratigraphic paleobiology in R" (Oct 31st 2024)
MindTheGap-ERC/.github
MindTheGap: Quantifying the completeness of the stratigraphic record and its role in reconstructing the tempo and mode of evolution
MindTheGap-ERC/CarbonateStratPalEvo
Code for "Identification of the Mode of Evolution in Incomplete Carbonate Successions"
MindTheGap-ERC/DarwinCAT_SoTL
Improving student understanding of the fossil record - a Scholarship of Teaching and Learning approach
MindTheGap-ERC/paleoTS_test
Examine paleoTS model selection performance with time series length
MindTheGap-ERC/ShellbedCondensator
Shiny app visualizing the effects of sedimentary condensation
MindTheGap-ERC/StratPal_workshop_materials
Workshop materials for modeling pipelines in stratigraphic paleobiology using the StratPal package
MindTheGap-ERC/Triangle_workflow
MindTheGap-ERC/CarboCAT_utils
Extracting data from CarboCAT model outputs
MindTheGap-ERC/CarboKittenData
Auxiliary data files for use with CarboKitten
MindTheGap-ERC/MindTheGap-ERC.github.io
Project webpage
MindTheGap-ERC/nonparam_est_adm_supp
Supplementary data and code for "Nonparametric estimation of age-depth models from sedimentological and stratigraphic data"
MindTheGap-ERC/PartiMoDe
Modeling Particle Movement and Destruction in the sediment surface mixed layer.
MindTheGap-ERC/phylo_stratpal
Rudimentary shiny app transforming phylogenetic trees using age-depth models
MindTheGap-ERC/R.Pijnenburg_BSc
BSc thesis of Robin Pijnenburg
MindTheGap-ERC/rhythmite
FDM-based code which solves the 5 coupled nonlinear diagenetic PDEs of L'Heureux (2018) https://doi.org/10.1155/2018/4968315
MindTheGap-ERC/stochUtils
Utility functions for probability theory
MindTheGap-ERC/stratorder
Quantify stratigraphic order
MindTheGap-ERC/StratPal_data_prep
Data preparation for StratPal workshop and package
MindTheGap-ERC/StratPal_ms_supp
Supplementary code for the manuscript "StratPal: An R package for creating stratigraphic paleobiology modeling pipelines"