MiqG

Hey there! I am a biotechnologist specialized in systems biology passionate about exploiting data for better understanding of our surroundings.

CRG - Serrano LabBarcelona

Pinned Repositories

robustica
customizable robust Independent Component Analysis (ICA)
Language:Jupyter Notebook11 3 64
ml_cnag-crg_course
Language:Jupyter Notebook1 2 01
30son30
Language:CSS0 1 00
EMA-Data-Scratching-with-RSelenium
Data Scratching from the European Medicines Agency (EMA)
Language:Jupyter Notebook5 1 12
leiden_clustering
Cluster your data matrix with the Leiden algorithm.
Language:Python4 1 02
practical_tools_for_quick_data_visualization
R-based tools that facilitate EDA.
Language:HTML0 2 01
project_template
Template to give structure to new projects from the start
Language:Python5 3 03
target_spotter
Language:Jupyter Notebook5 1 01
tidytuesday
Language:R1 1 00
ezRun
An R meta-package for the analysis of Next Generation Sequencing data
Language:R23 15 888

MiqG's Repositories

MiqG/target_spotter
Language:Jupyter Notebook5 1 01
MiqG/tidytuesday
Language:R1 1 00
MiqG/30son30
Language:CSS0 1 00
MiqG/AbSplice_analysis
Language:Python0 0 00
MiqG/agop_feature_learning
Language:Jupyter Notebook0 0 00
MiqG/ARACNe-AP
Network Reverse Engineering through AP inference of Mutual Information
Language:Java0 0 00
MiqG/practical_tools_for_quick_data_visualization
R-based tools that facilitate EDA.
Language:HTML0 2 01
MiqG/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
Language:R0 0
MiqG/cross-modal-autoencoders
Language:Python0 0
MiqG/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Language:Python0 0
MiqG/ggplot2-graphic-design
Language:R0 0
MiqG/janggu
Deep learning infrastructure for genomics
Language:Jupyter Notebook
MiqG/lorna-sh
LoRNA-SH: A long-context RNA foundation model for predicting transcriptome architecture. Training pipeline and model weights.
Language:Python
MiqG/miqg.github.io
personal blog and portfolio
Language:HTML0 0
MiqG/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Language:Python0 0
MiqG/Pangolin
Pangolin is a deep-learning method for predicting splice site strengths.
Language:Python0 0
MiqG/publication_robustica
Language:R1 0
MiqG/publication_spotter
Language:R
MiqG/publication_viper_splicing
Language:Python
MiqG/publication_zadra_ttll11
Scripts for publication Zadra et. al. 2021
Language:R1 0
MiqG/pyfoldx
pyFoldX: python bindings for FoldX.
Language:Jupyter Notebook0 0
MiqG/python_course_VHIO
Language:Jupyter Notebook0 0
MiqG/qtlmap
Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
Language:R0 0
MiqG/splicemap
Language:Jupyter Notebook0 0
MiqG/SpliSER
Bioinformatic tool for Splice site Strength Estimation using RNA-seq
Language:Python
MiqG/stripedhyena
Repository for StripedHyena, a state-of-the-art beyond Transformer architecture
MiqG/tired-of-googling
Random stuff that I don't want to google anymore
1 0
MiqG/viper_splicing
Language:R1 0
MiqG/webtesting
Language:HTML1 0
MiqG/what-the-stats
Language:JavaScript1 0