Miraldi Research Lab

CHEERS

ILCnetworks

Gene regulatory networks for intestinal innate lymphoid cells

Inferelator_Julia

infTRN_lassoStARS

Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS

Interactive_visualization

HAE scripts codebank

JuliaInferelator_V2

Version 2 of the JuliaInferelator

maxATAC

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

maxATAC_data

This repo contains additional resources for the maxATAC Python package.

snakeATAC

A snakemake workflow to process ATAC-seq data

snakeCHIP

A snakemake workflow for ChIP-seq data processing

MiraldiLab/maxATAC

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

MiraldiLab/maxATAC_data

This repo contains additional resources for the maxATAC Python package.

MiraldiLab/Inferelator_Julia

MiraldiLab/CHEERS

MiraldiLab/ILCnetworks

Gene regulatory networks for intestinal innate lymphoid cells

MiraldiLab/infTRN_lassoStARS

Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS

MiraldiLab/Interactive_visualization

HAE scripts codebank

MiraldiLab/JuliaInferelator_V2

Version 2 of the JuliaInferelator

MiraldiLab/snakeATAC

A snakemake workflow to process ATAC-seq data

MiraldiLab/snakeCHIP

A snakemake workflow for ChIP-seq data processing

MiraldiLab/Th17_TRN_Networks

Data and notebooks for "Leveraging ATAC-seq data for transcriptional regulatory inference in Th17 Cells" by Miraldi et al.