Miro-Astore

biophyscist @flatironinstitute. Using molecular dynamics to study temperature sensation and cryoEM methods.

New York, NY

Pinned Repositories

assorted_md
Language:Tcl0 2 00
assorted_scripts
assorted scripts, mostly related to MD or laziness
Language:Rich Text Format00
autodock_pipeline
Language:Shell00
BioEM
GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.
Language:C++0 0 00
gnome_ui_scripts
A few scripts to tweak the gnome 3 ui. xdotool required.
Language:Shell110
gromacs_scripts
assorted scripts for working with gromacs
Language:Rich Text Format41
mdanalysis_scripts
assorted scripts for analysing molecular dynamics simulations.
Language:Python3 2 03
openmm_workflow
assorted scripts for openmm
Language:Python4 1 01
plumed_scripts
Language:Python5 2 01
pyemma_scripts
scripts for analysing md trajectories with the pyemma libraries.
Language:Python1 2 01

Miro-Astore's Repositories

Miro-Astore/gnome_ui_scripts
A few scripts to tweak the gnome 3 ui. xdotool required.
Language:Shell110
Miro-Astore/plumed_scripts
Language:Python5 2 01
Miro-Astore/gromacs_scripts
assorted scripts for working with gromacs
Language:Rich Text Format41
Miro-Astore/openmm_workflow
assorted scripts for openmm
Language:Python4 1 01
Miro-Astore/mdanalysis_scripts
assorted scripts for analysing molecular dynamics simulations.
Language:Python3 2 03
Miro-Astore/pyemma_scripts
scripts for analysing md trajectories with the pyemma libraries.
Language:Python1 2 01
Miro-Astore/assorted_md
Language:Tcl0 2 00
Miro-Astore/assorted_scripts
assorted scripts, mostly related to MD or laziness
Language:Rich Text Format00
Miro-Astore/autodock_pipeline
Language:Shell00
Miro-Astore/BioEM
GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.
Language:C++0 0 00
Miro-Astore/bioinformatics_scripts
assorted scripts associated with bioinformatics, mostly protein sequence analysis/manipulation
2 0
Miro-Astore/cryo_scripts
assorted scripts for dealing with cryoEM data
Language:Shell
Miro-Astore/cryobias
Language:Jupyter Notebook
Miro-Astore/cryojax
Cryo electron microscopy image simulation and analysis built on JAX.
Language:Python0 0
Miro-Astore/cryojax_reweight
Miro-Astore/ion_solvation_openmm
Ion solvation free energy with spherical boundary conditions
Language:Python
Miro-Astore/mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
Language:Python1 0
Miro-Astore/miro-astore.github.io
A beautiful, simple, clean, and responsive Jekyll theme for academics
Language:JavaScript1 0
Miro-Astore/modeller_workflow
Language:Python2 0
Miro-Astore/mutation_builder
workflow for building several missense mutations for protein analysis from a template system
Language:Rich Text Format
Miro-Astore/namd2_scripts
Assorted scripts for working with namd.
Miro-Astore/namd_scripts
assorted scripts for running MD simulations in NAMD
Language:Tcl2 0
Miro-Astore/pdb2fasta
Take a PDB file and spit out protein sequence in 3 or 1 letter format
Language:Python1 0
Miro-Astore/relion_scripts
1 0
Miro-Astore/searching_charmm
Language:Shell2 0
Miro-Astore/testing
Miro-Astore/thesis_template
a latex template you can use for your phd thesis.
Language:TeX
Miro-Astore/vmd-cvs-github
Language:C1 0