Pinned Repositories
atlas
ATLAS - Three commands to start analyzing your metagenome data
Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
bioinformatics-ca.github.io
not used anymore
biostat561
Course materials for BIOST561
conda
Specifying a conda environment with `environment.yml`
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
data_to_viz
Leading to the dataviz you need
DivNet
diversity estimation under ecological networks
EasyAmplicon
Easy Amplicon data analysis pipeline
ebi-metagenomics-cwl
This repository contains the CWL description of the EBI Metagenomics pipeline
Mitiku90's Repositories
Mitiku90/atlas
ATLAS - Three commands to start analyzing your metagenome data
Mitiku90/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Mitiku90/bioinformatics-ca.github.io
not used anymore
Mitiku90/biostat561
Course materials for BIOST561
Mitiku90/conda
Specifying a conda environment with `environment.yml`
Mitiku90/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
Mitiku90/data_to_viz
Leading to the dataviz you need
Mitiku90/DivNet
diversity estimation under ecological networks
Mitiku90/EasyAmplicon
Easy Amplicon data analysis pipeline
Mitiku90/ebi-metagenomics-cwl
This repository contains the CWL description of the EBI Metagenomics pipeline
Mitiku90/GeneLab_Data_Processing
Mitiku90/kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Mitiku90/microbiomeExplorer
The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.
Mitiku90/Mitiku90.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Mitiku90/MMS
Mitiku90/mylifeinmonths
Mitiku90/personal-website
Code that'll help you kickstart a personal website that showcases your work as a software developer.
Mitiku90/picrust2
Code, unit tests, and tutorials for running PICRUSt2
Mitiku90/qiime2R
Import qiime2 artifacts to R
Mitiku90/r-for-excel
R for Excel Users Workshop (in development)
Mitiku90/Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
Mitiku90/topic-amplicons
A repository for the lessons and notebooks used for amplicons tutorials.
Mitiku90/topic-functional-annotation
A repository for the lessons and notebooks used for Binder tutorials
Mitiku90/topic-metagenomics
A repository for the lessons and notebooks used for Binder tutorials
Mitiku90/topic-R
A repository for the lessons and notebooks used for R tutorials.
Mitiku90/Trycycler
A tool for generating consensus long-read assemblies for bacterial genomes