Simple python script to extract data ,put them in .csv file and .pnm image. Also merge data and image back to dicom file. Used flif for intermidiate image compression.
git
make
python2
virtual-env
for ubuntu run install.sh file, needs permission to globally install packages
chmod 777 install.sh./install.shor
create this diroctories in project root
data dicom extracted_pnm flif image merged_dicom
install dcmtk
install gdcm tools
install FLIF
make a virtualenv
virtualenv envactivate
source env/bin/activateinstall python dependencies
pip install -r requirements.txtjust run extract_from_dcm.py or merge_to_dcm.py