MobleyLab/basic_simulation_training

Issues

• (Longer term) Expand discussion of PBC to address visualization issues with "molecules outside the box"

  #93 opened 6 years ago by davidlmobley
  2

• Defining 'NVT' and 'NVE'

  #122 opened 5 years ago by mrshirts
  3

• Create tagged version with a release once accepted

  #87 opened 6 years ago by justinGilmer
  6

• Update citations to LiveCoMS first issue papers before final publication.

  #102 opened 6 years ago by mrshirts
  2

• best way to cite?

  #101 opened 6 years ago by brookehus
  6

• Need Monroe ORCID

  #114 opened 6 years ago by davidlmobley
  1

• Unused references

  #117 opened 6 years ago
  1

• Duplicate references

  #116 opened 6 years ago
  1

• It would be useful to have citations on this point.

  #109 opened 6 years ago by mrshirts
  1

• Missing space before citation.

  #108 opened 6 years ago by mrshirts
  1

• But generally, the autocorrelation time isn't known beforehand.

  #107 opened 6 years ago by mrshirts
  1

• Add citations / website links for the tools mentioned here.

  #106 opened 6 years ago by mrshirts
  1

• Should be "which fall off as 1/r3"

  #105 opened 6 years ago by mrshirts
  1

• Shorter paragraphs in future versions?

  #104 opened 6 years ago by mrshirts
  1

• Helmholtz free energy is A, not F.

  #103 opened 6 years ago by mrshirts
  2

• Use bibliography checking software to check references

  #100 opened 6 years ago by davidlmobley
  1

• Peer reviews are in; need to deal with them ASAP

  #91 opened 6 years ago by davidlmobley
  3

• Typo/grammar fixes/clarity issues to deal with for revisions

  #89 opened 6 years ago by davidlmobley
  47

• Add source materials for figures

  #77 opened 6 years ago by davidlmobley
  3

• Submit paper

  #83 opened 6 years ago by davidlmobley
  6

• To do items for a subsequent revision (?)

  #71 opened 6 years ago by davidlmobley
  2

• Deal with remaining to-do items

  #52 opened 6 years ago by davidlmobley
  7

• Figure additions?

  #59 opened 6 years ago by davidlmobley
  9

• Edit PME section, check number of equations

  #43 opened 6 years ago by davidlmobley
  2

• Two things I'm not sure about

  #68 opened 6 years ago by EfremBraun
  2

• Revisions

  #63 opened 6 years ago by EfremBraun
  1

• Add bullet points at beginnings of sections

  #34 opened 6 years ago by JIMonroe
  2

• Check books referenced and make sure we want to endorse

  #23 opened 6 years ago by davidlmobley
  8

• Fill out Thermodynamics section

  #35 opened 6 years ago by JIMonroe
  2

• Migrate cited Shell notes to GitHub

  #4 opened 7 years ago by davidlmobley
  5

• Write "Barostats" section

  #19 opened 6 years ago by JIMonroe
  10

• Write "Integrators" section

  #20 opened 6 years ago by JIMonroe
  7

• Add something on MC barostats

  #46 opened 6 years ago by davidlmobley
  3

• Thermostat naming

  #50 opened 6 years ago by davidlmobley
  4

• Should I add more refs in general?

  #41 opened 6 years ago by hmayes
  2

• Write "Long range electrostatics" section

  #21 opened 6 years ago by JIMonroe
  3

• Should we remove the long-range electrostatics section?

  #6 opened 6 years ago by JIMonroe
  4

• Move "Stochastic Dynamics" section to sub-section of "Integrators"

  #15 opened 6 years ago by JIMonroe
  1

• Write "Classical statistical mechanics" section

  #18 opened 6 years ago by JIMonroe
  5

• Migrated suggested edits for thermostat section

  #13 opened 6 years ago by JIMonroe
  3

• Url not wrapping properly

  #8 opened 6 years ago by justinGilmer
  1

• Post the section assignments here?

  #3 opened 6 years ago by davidlmobley
  4

• Make Issues for remaining content to be written?

  #17 opened 6 years ago by davidlmobley
  1

• Latex Makefile for proper compilation?

  #9 opened 7 years ago by justinGilmer
  2