MohmedSoudy

Bioinformatics Research Associate

ProteineaCairo, Egypt

Pinned Repositories

3D-Structre-Prediction
A Docker image to predict the 3D structures of given sequences in a FASTA file
Language:Python00
Bioinformatics-pipeline
Courses, tutorials and books that facilitate bioinformatics.
46 7 010
DFD
Get Drugs From Differential expression profile
Language:R10
Insights-into-few-shot-learning-for-scene-classification
Language:Jupyter Notebook12
MERO
Perform missing value imputation for biological data using the random forest algorithm, the imputation aim to keep the original mean and standard deviation consistent after imputation.
Language:R30
MGF-Converter
The software is a graphical user interface converter that relies on AB SCIEX MS Data Converter to convert mass spectral data (*.WIFF) from any AB SCIEX instrument into MGF files.
11
ORTSC
Connects to Google cloud vision <https://cloud.google.com/vision> to perform label detection and repurpose this feature for image classification.
Language:R10
RNA-Secondary-Structure-Prediction
A C# Desktop Application used to predict RNA secondary structure from given sequence. Connected to NCBI to facilitate sequence download.
Language:C#10
training-collection
Collection of bioinformatics training materials
173
UniprotR
Retrieving Information of Proteins from Uniprot
Language:R10

MohmedSoudy's Repositories

MohmedSoudy/Bioinformatics-pipeline
Courses, tutorials and books that facilitate bioinformatics.
46 7 010
MohmedSoudy/training-collection
Collection of bioinformatics training materials
173
MohmedSoudy/MERO
Perform missing value imputation for biological data using the random forest algorithm, the imputation aim to keep the original mean and standard deviation consistent after imputation.
Language:R30
MohmedSoudy/DFD
Get Drugs From Differential expression profile
Language:R10
MohmedSoudy/Insights-into-few-shot-learning-for-scene-classification
Language:Jupyter Notebook12
MohmedSoudy/UniprotR
Retrieving Information of Proteins from Uniprot
Language:R10
MohmedSoudy/3D-Structre-Prediction
A Docker image to predict the 3D structures of given sequences in a FASTA file
Language:Python00
MohmedSoudy/A-generic-approach-for-image-scene-classification-using-few-shot-learning
Language:Jupyter Notebook
MohmedSoudy/acdc-nn
MohmedSoudy/ClusterDuck
Disease Clustering from Literature Based on Minimal Training Data
MohmedSoudy/cs-video-courses
List of Computer Science courses with video lectures.
1 0
MohmedSoudy/datasets
TFDS is a collection of datasets ready to use with TensorFlow, Jax, ...
MohmedSoudy/datasharing
The Leek group guide to data sharing
Language:HTML
MohmedSoudy/ddgun
predict stability change upon mutation
MohmedSoudy/FASTA-Cleaner
Clean input FASTA file that contains Amino acid sequences with rare Amino acids as 'X, U'
Language:Python
MohmedSoudy/FPredX
This repository contains the FPredX models for the prediction of excitation maximum, emission maximum, brightness and oligomeric state of fluorescent proteins.
Language:Python
MohmedSoudy/GeneCloudOmics
A Biostatistical tool for Transcriptomics Analysis
Language:R1 0
MohmedSoudy/ggaligner
Visualizing Sequence Alignment by Generating Publication-Ready Plots
Language:R
MohmedSoudy/Host-shiny-app-using-shiny-server
A stepby step guide on how to how to host shiny app using shiny-server and apache2
Language:R
MohmedSoudy/Intel-Scene-Classification
This repo for scene classification on Intel scenes derived from Kaggle challenge
Language:Shell
MohmedSoudy/joss-reviews
Reviews for the Journal of Open Source Software
MohmedSoudy/NetSolP-1.0
MohmedSoudy/Onco-ProteoGenomics
Combining Multi-Omics for optimization and finding novel peptides in cancer diseases
Language:R3 01
MohmedSoudy/openPIP
The open protein interaction platform repo
Language:JavaScript
MohmedSoudy/RCrashCourse_Book
A GitBook version of the R Crash Course self-tutorials: https://colauttilab.github.io/RCrashCourse
MohmedSoudy/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
MohmedSoudy/RNA-Seq-in-the-Cloud
An Easy to Use Analysis System for All Human Public bulk RNAseq Data!
MohmedSoudy/SCMcluster
SCMcluster is an ensemble clustering algorithm for single-cell RNA sequencing data.
Language:Python
MohmedSoudy/ScRNAIMM
Performing single-cell imputation in a way that preserves the biological variations in the data. The package clusters the input data to do imputation for each cluster, and do a distribution check using the Anderson-Darling normality test to impute dropouts using mean or median (Yazici, B., & Yolacan, S. (2007) <doi:10.1080/10629360600678310>).
Language:R1 0
MohmedSoudy/SimpleGeneExpression
Programs to quantify expression of transcripts from public datasets