Wrong "missing data" flags for Bcl2Fastq-v2.15
matrulda opened this issue · 1 comments
matrulda commented
The missing data flags (--ignore-missing-stats, --ignore-missing-bcl, --ignore-missing-control), which are added to the configureBclToFastq command when -ignore is added to the Sisyphus command, does not work for Bcl2FastQ-v2.15.
The flag to be used for Bcl2FastQ-v2.15 is: --ignore-missing-bcls