Molmed/sisyphus

Issues

• Sisyphus gives interactive challenge for aeacus-reports.pl

  #131 opened 8 years ago by johandahlberg
  1

• IndexCheck cannot handle case where index is unknown (i.e no index)

  #128 opened 9 years ago by matrulda
  0

• Problem when masking one index

  #121 opened 9 years ago by matrulda
  1

• getMachineID fails when using -miseq flag

  #124 opened 9 years ago by matrulda
  1

• No need to search entire runfolder for fastq files

  #123 opened 9 years ago by johandahlberg
  2

• Automatisera sisyphus

  #3 opened 9 years ago by Smeds
  1

• Möjligheten att generera Index read fil

  #11 opened 9 years ago by Smeds
  1

• Wrong "missing data" flags for Bcl2Fastq-v2.15

  #86 opened 9 years ago by matrulda
  1

• Remove "sleep" functionalities in Sisyphus

  #93 opened 9 years ago by matrulda
  2

• Bugs when running sisyphus with -miseq flag

  #87 opened 9 years ago by matrulda
  0

• Update needed for future HiSeqX runs with dual index

  #102 opened 9 years ago by matrulda
  0

• Automatic NGI pipeline start does not work

  #101 opened 9 years ago by matrulda
  1

• Uppdatera för leverans till Nestor

  #5 opened 9 years ago by Smeds
  1

• the user reports should include the software version of bcl2fastq

  #89 opened 9 years ago by b97pla
  0

• Replace miseq flag with config specification

  #88 opened 9 years ago by matrulda
  0

• QC fungerar ej för HiSeq Rapid-körning

  #59 opened 9 years ago by matrulda
  1

• Sisyphus can't handle run where a lane has been removed

  #64 opened 10 years ago by matrulda
  0

• Fel kastas när unidentified saknas

  #57 opened 10 years ago by matrulda
  1

• Fix unnecessary prints

  #62 opened 10 years ago by matrulda
  1

• Nytt QC-kriterie

  #4 opened 10 years ago by Smeds
  0

• Längre runtime för sbatch job

  #6 opened 10 years ago by Smeds
  0

• Ta bort komprimering av körscript

  #8 opened 10 years ago by Smeds
  0

• Sisyphus dör inte om RunInfo.xml filen inte finns

  #15 opened 10 years ago by johandahlberg
  0

• Verify MiSeq analysis folder integrity after transfer

  #25 opened 10 years ago by b97pla
  0

• quick reports till nya mailing listan

  #17 opened 10 years ago by johandahlberg
  0

• använd ett konstant seed vid sampling av fastq reads

  #16 opened 10 years ago by b97pla
  0

• Möjliggör att skippa demultiplexning

  #10 opened 10 years ago by b97pla
  0

• Namn på md5-fil för miseqrunfolder

  #12 opened 10 years ago by Smeds
  0

• Kompatibilitetsproblem med gnuplot 4.6.5

  #9 opened 10 years ago by Smeds
  1

• Ändra leveransformat

  #7 opened 10 years ago by Smeds
  0