Pinned Repositories
Algorithm1
Algorithm1
ansible-bender
ansible-playbook + buildah = a sweet container image
ansible-st2
Ansible Roles and Playbooks to deploy StackStorm
arteria-bcl2fastq
Provides a simple http-interface for Illumina bcl2fastq
arteria-packs
StackStorm packs to automate sequencing center operations
arteria-provisioning
Provisioning for the Arteria project
backupninja
An old sandbox of the backupninja repository. Please refer to the upstream on 0xacab.org
bioconda-recipes
Conda recipes for the bioconda channel.
biocontainers
Bioinformatics containers
status_light_visualization
Kibana vis plugin
Smeds's Repositories
Smeds/ansible-bender
ansible-playbook + buildah = a sweet container image
Smeds/arteria-bcl2fastq
Provides a simple http-interface for Illumina bcl2fastq
Smeds/arteria-packs
StackStorm packs to automate sequencing center operations
Smeds/bioconda-recipes
Conda recipes for the bioconda channel.
Smeds/biocontainers
Bioinformatics containers
Smeds/brc-analytics
Smeds/dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
Smeds/docker-backupninja
Dockerfile for Backupninja
Smeds/docker-backupninja-1
A backupninja container for handling backups.
Smeds/ductus-packs-1
Smeds/DummySnakemakeModule
Smeds/FuSeq_WES
Smeds/galaxy
Data intensive science for everyone.
Smeds/iwc
Galaxy Workflows maintained by the Intergalactic Workflow Commission
Smeds/localq
Smeds/mkdocs_snakemake_rule_plugin
Smeds/mkdocs_yaml_schema_plugin
Smeds/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Smeds/multiqc_cgs
MultiQC plugin that will make it possible to add more columns to general statistics table
Smeds/pgx
Pharmacogenomics pipeline
Smeds/pgx_module
Anlysis of pharmacogenomic targets from Genomic Medicine Swedens heamatology panel.
Smeds/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
Smeds/SERA
Smeds/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Smeds/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Smeds/tools
Python package with helper tools for the nf-core community.
Smeds/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
Smeds/twist_exome_38
Smeds/wgs_std_viper
Simple workflow to map WGS data to reference genome according to GATK best practices
Smeds/WorkflowSandbox
WorkflowSandbox