/RNAsik-pipe

RNAsik - more than just a pipeline

Primary LanguageTeXApache License 2.0Apache-2.0

RNAsik-pipe

DOI

Build Status

install-with-conda

anaconda-version

This is fully SIcK way towards differential gene expression !

RNAsik-pipe implemented in BigDataScript (bds) language.

IF( SuperQuickStart ) {

RNAsik -fqDir https://bioinformatics.erc.monash.edu/home/kirill/sikTestData/rawData/fqFiles.txt \
       -align star \
       -fastaRef ftp://ftp.ensembl.org/pub/release-91/fasta/saccharomyces_cerevisiae/dna/Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa.gz \
       -gtfFile ftp://ftp.ensembl.org/pub/release-91/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.R64-1-1.91.gtf.gz \
       -counts \
       -paired \
       -all

}

ELSE RNAsik-website