This repository contains detailed code for the analysis of scRNAseq data
- Quality and Preprocessing
- Clustering and Cell Classification
- Cell Proportions Analysis
- Clusters Markers Interactive
- Deconvolution Analysis
- Pseudobulk Differential Expression
- 0_Stroma Pseudobulk
- 1_Stroma Pseudobulk
- 2_Stroma Pseudobulk
- 3_Stroma Pseudobulk
- 4_Stroma Pseudobulk
- 5_Distal_Tubule Pseudobulk.md
- 6_Proliferating Pseudobulk.md
- 7_Myocyte Pseudobulk
- 8_Podocyte Pseudobulk
- 9_Neural Pseudobulk
- 10_Early_Nephron Pseudobulk
- 11_Cellular_Stress Pseudobulk
- 12_Proximal_Tubule Pseudobulk
- 13_Endotelial Pseudobulk