Pinned Repositories
DL_EXP_PC
Deep learning experiment - pixel classification
image-analysis-notebooks
imagej_macros_and_scripts
ImageJ macros and scripts written at the imaging facility MRI
MetroloJ_QC
microglia-analyzer
A Napari plugin meant to detect and segment microglia before extracting some measures about them.
microscopemetrics-omero
mri-workshop-machine-learning
The MRI machine learning workshop
napari-bigfish
A napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images
napari-J
Connect Napari with FIJI/ImageJ
napari-surfaces
Tools to work with iso-surfaces and meshes in napari
Montpellier Ressources Imagerie's Repositories
MontpellierRessourcesImagerie/imagej_macros_and_scripts
ImageJ macros and scripts written at the imaging facility MRI
MontpellierRessourcesImagerie/MetroloJ_QC
MontpellierRessourcesImagerie/mri-workshop-machine-learning
The MRI machine learning workshop
MontpellierRessourcesImagerie/napari-bigfish
A napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images
MontpellierRessourcesImagerie/napari-J
Connect Napari with FIJI/ImageJ
MontpellierRessourcesImagerie/microglia-analyzer
A Napari plugin meant to detect and segment microglia before extracting some measures about them.
MontpellierRessourcesImagerie/microscopemetrics-omero
MontpellierRessourcesImagerie/napari-surfaces
Tools to work with iso-surfaces and meshes in napari
MontpellierRessourcesImagerie/matlab_scripts
matlab scripts written at the MRI core imaging facility
MontpellierRessourcesImagerie/meiosis_bar
MontpellierRessourcesImagerie/3D-Image-Analysis-Workshop
Workshop material for the 3D image analysis workshop
MontpellierRessourcesImagerie/current-napari-blob-detection
A napari plugin for detecting blobs in images as points
MontpellierRessourcesImagerie/dl4mic
Project to deploy the ZeroCostDL4Mic networks to the users of the facility. Run the training and application of the networks as python scripts.
MontpellierRessourcesImagerie/entry-exit-mouse-box
MontpellierRessourcesImagerie/ij-macro-programming-workshop
The MRI workshop about ImageJ macro programming.
MontpellierRessourcesImagerie/meiosis_bar_archive
MontpellierRessourcesImagerie/microscope-metrics
MontpellierRessourcesImagerie/microscopemetrics-dashboard
MontpellierRessourcesImagerie/microscopemetrics-schema
MontpellierRessourcesImagerie/mri-cia-documents
Public documents related to the MRI-CIA service.
MontpellierRessourcesImagerie/OMERO-metrics
OMERO-metrics is an omero web app to analyze and visualize microscope metrology data
MontpellierRessourcesImagerie/point-pattern-analysis
MontpellierRessourcesImagerie/presentations
MontpellierRessourcesImagerie/psf-analysis
Extract psfs and find aberrations like a tilt and a banana shape of the psf-core
MontpellierRessourcesImagerie/python_in_an_hour
A short introduction to python as a supplement to the MRI Machine Learning workshop
MontpellierRessourcesImagerie/qupath_scripts
General qupath scripts that are not project specific
MontpellierRessourcesImagerie/rtd-tutorial
readthedocs tutorial
MontpellierRessourcesImagerie/set-scale-tool
MontpellierRessourcesImagerie/spots-in-yeasts
Napari plugin producing a segmentation of yeast cells according to their transmission channel, and detecting YFP spots in the fluo channel.
MontpellierRessourcesImagerie/spots-to-membrane
Segment cells in 3D from a membrane staining and process the distance between spots (from a CSV) and the membrane.